Junmei Wang

Publication Activity (10 Years)

Years Active: 1999-2024
Publications (10 Years): 49

Top Topics

Scoring Function

Molecular Dynamics

Relevance Feedback

Top Venues

J. Chem. Inf. Model.

Briefings Bioinform.

J. Heal. Informatics Res.

Publications

Jiajia Wang, Jimmy Xiangji Huang, Xinhui Tu, Junmei Wang, Angela Jennifer Huang, Md. Tahmid Rahman Laskar, Amran Bhuiyan
Utilizing BERT for Information Retrieval: Survey, Applications, Resources, and Challenges. ACM Comput. Surv. 56 (7) (2024)
Jiajia Wang, Jimmy X. Huang, Xinhui Tu, Junmei Wang, Angela Jennifer Huang, Md. Tahmid Rahman Laskar, Amran Bhuiyan
Utilizing BERT for Information Retrieval: Survey, Applications, Resources, and Challenges. CoRR (2024)
David Oniani, Jordan Hilsman, Chengxi Zang, Junmei Wang, Lianjin Cai, Jan Zawala, Yanshan Wang
Emerging Opportunities of Using Large Language Language Models for Translation Between Drug Molecules and Indications. CoRR (2024)
Jie Yu, Chao Zhang, Junmei Wang, Mingzhi Zhang, Xingguo Zhang, Xiaoqin Li
Research on Asparagus Recognition Based on Deep Learning. IEEE Access 11 (2023)
David A. Case, Hasan Metin Aktulga, Kellon Belfon, David S. Cerutti, G. Andrés Cisneros, Vinícius Wilian D. Cruzeiro, Negin Forouzesh, Timothy J. Giese, Andreas W. Götz, Holger Gohlke, Saeed Izadi, Koushik Kasavajhala, Mehmet Cagri Kaymak, Edward King, Tom Kurtzman, Tai-Sung Lee, Pengfei Li, Jian Liu, Tyler Luchko, Ray Luo, Madushanka Manathunga, Matías R. Machado, Hai Minh Nguyen, Kurt A. O'Hearn, Alexey V. Onufriev, Feng Pan, Sergio Pantano, Ruxi Qi, Ali Rahnamoun, Ali Risheh, Stephan Schott-Verdugo, Akhil Shajan, Jason M. Swails, Junmei Wang, Haixin Wei, Xiongwu Wu, Yongxian Wu, Shi Zhang, Shiji Zhao, Qiang Zhu, Thomas E. Cheatham, Daniel R. Roe, Adrian E. Roitberg, Carlos Simmerling, Darrin M. York, Maria C. Nagan, Kenneth M. Merz Jr.
AmberTools. J. Chem. Inf. Model. 63 (20) (2023)
Viet Hoang Man, Xibing He, Fengyang Han, Lianjin Cai, Luxuan Wang, Taoyu Niu, Jingchen Zhai, Beihong Ji, Jie Gao, Junmei Wang
Phosphorylation at Ser289 Enhances the Oligomerization of Tau Repeat R2. J. Chem. Inf. Model. 63 (4) (2023)
Yuchen Sun, Xibing He, Tingjun Hou, Lianjin Cai, Viet Hoang Man, Junmei Wang
Development and test of highly accurate endpoint free energy methods. 1: Evaluation of ABCG2 charge model on solvation free energy prediction and optimization of atom radii suitable for more accurate solvation free energy prediction by the PBSA method. J. Comput. Chem. 44 (14) (2023)
Yongming Li, Wuniu Liu, Junmei Wang, Xianfeng Yu, Chao Li
Model Checking of Possibilistic Linear-Time Properties Based on Generalized Possibilistic Decision Processes. IEEE Trans. Fuzzy Syst. 31 (10) (2023)
Viet Hoang Man, Xibing He, Phuong H. Nguyen, Celeste Sagui, Christopher Roland, Xiang-Qun Xie, Junmei Wang
Unpolarized laser method for infrared spectrum calculation of amide I C=O bonds in proteins using molecular dynamics simulation. Comput. Biol. Medicine 159 (2023)
Jike Wang, Yundian Zeng, Huiyong Sun, Junmei Wang, Xiaorui Wang, Ruofan Jin, Mingyang Wang, Xujun Zhang, Dong-Sheng Cao, Xi Chen, Chang-Yu Hsieh, Tingjun Hou
Molecular Generation with Reduced Labeling through Constraint Architecture. J. Chem. Inf. Model. 63 (11) (2023)
Jie Yang, Chao Zhang, Pingzeng Liu, Junmei Wang
Empirical Study on the Factors Influencing Asparagus Prices Based on VAR Model. ICBAR (2023)
Min Pan, Quanli Pei, Yu Liu, Teng Li, Ellen Anne Huang, Junmei Wang, Jimmy Xiangji Huang
SPRF: A semantic Pseudo-relevance Feedback enhancement for information retrieval via ConceptNet. Knowl. Based Syst. 274 (2023)
Fengyang Han, Dongxiao Hao, Xibing He, Luxuan Wang, Taoyu Niu, Junmei Wang
Distribution of Bound Conformations in Conformational Ensembles for X-ray Ligands Predicted by the ANI-2X Machine Learning Potential. J. Chem. Inf. Model. 63 (21) (2023)
Yuchen Sun, Tingjun Hou, Xibing He, Viet Hoang Man, Junmei Wang
-octanol-water partition coefficient (logP) for druglike molecules using MM-PBSA method. J. Comput. Chem. 44 (13) (2023)
Zhichao Chen, Junmei Wang, Xiwei Yang
A Concept Net-based semantic constraint method for query expansion. WI/IAT (2022)
Viet Hoang Man, Xibing He, Junmei Wang
Oligomerization. J. Chem. Inf. Model. 62 (16) (2022)
Min Pan, Junmei Wang, Jimmy X. Huang, Angela J. Huang, Qi Chen, Jinguang Chen
A probabilistic framework for integrating sentence-level semantics via BERT into pseudo-relevance feedback. Inf. Process. Manag. 59 (1) (2022)
Asuka A. Orr, Suliman Sharif, Junmei Wang, Alexander D. MacKerell Jr.
Preserving the Integrity of Empirical Force Fields. J. Chem. Inf. Model. 62 (16) (2022)
Junmei Wang, Jin Liu
Effects of a New Media Data Interaction System on Teaching Efficiency in Vocational Education. Int. J. Emerg. Technol. Learn. 17 (7) (2022)
Jialu Wu, Junmei Wang, Zhenxing Wu, Shengyu Zhang, Yafeng Deng, Yu Kang, Dong-Sheng Cao, Chang-Yu Hsieh, Tingjun Hou
ALipSol: An Attention-Driven Mixture-of-Experts Model for Lipophilicity and Solubility Prediction. J. Chem. Inf. Model. 62 (23) (2022)
Ercheng Wang, Weitao Fu, Dejun Jiang, Huiyong Sun, Junmei Wang, Xujun Zhang, Gaoqi Weng, Hui Liu, Peng Tao, Tingjun Hou
VAD-MM/GBSA: A Variable Atomic Dielectric MM/GBSA Model for Improved Accuracy in Protein-Ligand Binding Free Energy Calculations. J. Chem. Inf. Model. 61 (6) (2021)
Liu Lianlian, Chao Zhang, Junmei Wang, Zhang Qing, Pingzeng Liu, Liu Chenyang, Yifei Sun
The effect of COVID-19 on garlic prices. SmartIoT (2021)
Chenyang Li, Chao Zhang, Junmei Wang, Yan Zhang, Pingzeng Liu, Xin Liu, Lianlian Liu, Yuanlong Wang
Effects of ENSO on Climate and Garlic Yield in Main Garlic Production Areas of China. SmartIoT (2021)
Yingxue Li, Wenxiao Jia, Junmei Wang, Jianying Guo, Qin Liu, Xiang Li, Guotong Xie, Fei Wang
ALeRT-COVID: Attentive Lockdown-awaRe Transfer Learning for Predicting COVID-19 Pandemics in Different Countries. J. Heal. Informatics Res. 5 (1) (2021)
Yuzhao Zhang, Xibing He, Jingchen Zhai, Beihong Ji, Viet Hoang Man, Junmei Wang
In silico binding profile characterization of SARS-CoV-2 spike protein and its mutants bound to human ACE2 receptor. Briefings Bioinform. 22 (6) (2021)
Beihong Ji, Xibing He, Yuzhao Zhang, Jingchen Zhai, Viet Hoang Man, Shuhan Liu, Junmei Wang
Incorporating structural similarity into a scoring function to enhance the prediction of binding affinities. J. Cheminformatics 13 (1) (2021)
Beihong Ji, Xibing He, Jingchen Zhai, Yuzhao Zhang, Viet Hoang Man, Junmei Wang
Machine learning on ligand-residue interaction profiles to significantly improve binding affinity prediction. Briefings Bioinform. 22 (5) (2021)
Pora Kim, Hanyang Li, Junmei Wang, Zhongming Zhao
Landscape of drug-resistance mutations in kinase regulatory hotspots. Briefings Bioinform. 22 (3) (2021)
Junmei Wang
Fast Identification of Possible Drug Treatment of Coronavirus Disease-19 (COVID-19) through Computational Drug Repurposing Study. J. Chem. Inf. Model. 60 (6) (2020)
Xiao Xu, Xiaoshuang Liu, Yanni Kang, Xian Xu, Junmei Wang, Yuyao Sun, Quanhe Chen, Xiaoyu Jia, Xinyue Ma, Xiaoyan Meng, Xiang Li, Guotong Xie
A Multi-directional Approach for Missing Value Estimation in Multivariate Time Series Clinical Data. J. Heal. Informatics Res. 4 (4) (2020)
Junmei Wang, Min Pan, Tingting He, Xiang Huang, Xueyan Wang, Xinhui Tu
A Pseudo-relevance feedback framework combining relevance matching and semantic matching for information retrieval. Inf. Process. Manag. 57 (6) (2020)
Dongxiao Hao, Xibing He, Beihong Ji, Shengli Zhang, Junmei Wang
How Well Does the Extended Linear Interaction Energy Method Perform in Accurate Binding Free Energy Calculations? J. Chem. Inf. Model. 60 (12) (2020)
Ercheng Wang, Hui Liu, Junmei Wang, Gaoqi Weng, Huiyong Sun, Zhe Wang, Yu Kang, Tingjun Hou
Development and Evaluation of MM/GBSA Based on a Variable Dielectric GB Model for Predicting Protein-Ligand Binding Affinities. J. Chem. Inf. Model. 60 (11) (2020)
Xibing He, Viet Hoang Man, Beihong Ji, Xiang-Qun Xie, Junmei Wang
Calculate protein-ligand binding affinities with the extended linear interaction energy method: application on the Cathepsin S set in the D3R Grand Challenge 3. J. Comput. Aided Mol. Des. 33 (1) (2019)
Anqi Huang, Chao Zhang, Pingzeng Liu, Junmei Wang, Wanming Ren, Yong Zheng
Input-Output Analysis of Chinese National Agricultural Science and Technology Park. ICAIS (2) (2019)
Junmei Wang, Yubin Ge, Xiang-Qun Xie
Development and Testing of Druglike Screening Libraries. J. Chem. Inf. Model. 59 (1) (2019)
Xiao Xu, Junmei Wang, Xian Xu, Yuyao Sun, Quanhe Chen, Xiang Li, Guotong Xie
Estimating Missing Values in Multivariate-Time-Series Clinical Data using Gradient Boosting Tree on Temporal and Cross-variable Features. ICHI (2019)
Xiang Li, Yanni Kang, Xiaoyu Jia, Junmei Wang, Guotong Xie
TASP: A Time-Phased Model for Sepsis Prediction. CinC (2019)
Haixia Ge, Yuemin Bian, Xibing He, Xiang-Qun Xie, Junmei Wang
Significantly different effects of tetrahydroberberrubine enantiomers on dopamine D1/D2 receptors revealed by experimental study and integrated in silico simulation. J. Comput. Aided Mol. Des. 33 (4) (2019)
Hao Hu, Junmei Wang, Xinhui Tu, Tingting He
CCNU_IRGroup @ TREC 2019 Deep Learning Track. TREC (2019)
Baojia Wang, Pingzeng Liu, Chao Zhang, Junmei Wang, Liu Peng
Prediction of Garlic Price Based on ARIMA Model. ICCCS (1) (2018)
Xueru Yu, Pingzeng Liu, Wanming Ren, Chao Zhang, Junmei Wang, Yong Zheng
Safety Traceability System of Livestock and Poultry Industrial Chain. ICCCS (6) (2018)
Jun Shang, Ben Hu, Junmei Wang, Feng Zhu, Yu Kang, Dan Li, Huiyong Sun, De-Xin Kong, Tingjun Hou
Cheminformatic Insight into the Differences between Terrestrial and Marine Originated Natural Products. J. Chem. Inf. Model. 58 (6) (2018)
Chao Zhang, Lei Zhang, Junmei Wang, Pingzeng Liu, Yong Zheng, Wanming Ren
Based on Data Analysis and JC Retrofit Scheme of Dam Risk Function and the Simulation Experiment. ICCCS (6) (2018)
Na Liu, Wenfang Zhou, Yue Guo, Junmei Wang, Weitao Fu, Huiyong Sun, Dan Li, Mojie Duan, Tingjun Hou
Molecular Dynamics Simulations Revealed the Regulation of Ligands to the Interactions between Androgen Receptor and Its Coactivator. J. Chem. Inf. Model. 58 (8) (2018)
Chao Zhang, Junmei Wang, Pingzeng Liu, Wanming Ren, Weijie Chen, Yanyan Wang
Traffic Accident Time Series Analysis. ICCCS (2) (2018)
Chao Zhang, Junmei Wang
The Internet of Things and Big Data in the Submarine Cable Release Process of Finite Element Simulation and Matlab Simulation. ICCCS (6) (2018)
Lining Liu, Pingzeng Liu, Wanming Ren, Yong Zheng, Chao Zhang, Junmei Wang
The Traceability Information Management Platform of Duck Product Industry Chain. ICCCS (6) (2018)
Guohua Qu, Weihua Qu, Junmei Wang, Haisheng Zhou, Zengliang Liu
Factorial-Quality Scalar and an Extension of ELECTRE in Intuitionistic Fuzzy Sets. Int. J. Inf. Technol. Decis. Mak. 17 (1) (2018)
Huiyong Sun, Youyong Li, Sheng Tian, Junmei Wang, Tingjun Hou
P-loop Conformation Governed Crizotinib Resistance in G2032R-Mutated ROS1 Tyrosine Kinase: Clues from Free Energy Landscape. PLoS Comput. Biol. 10 (7) (2014)
Qian Zhang, Wei Zhang, Youyong Li, Junmei Wang, Jian Zhang, Tingjun Hou
MORT: a powerful foundational library for computational biology and CADD. J. Cheminformatics 6 (1) (2014)
Qian Zhang, José M. García, Junmei Wang, Tingjun Hou, Horacio Emilio Pérez Sánchez
A GPU based Conformational Entropy Calculation Method. IWBBIO (2013)
Qian Zhang, Junmei Wang, Ginés D. Guerrero, José M. Cecilia, José M. García, Youyong Li, Horacio Emilio Pérez Sánchez, Tingjun Hou
Accelerated Conformational Entropy Calculations Using Graphic Processing Units. J. Chem. Inf. Model. 53 (8) (2013)
Sheng Tian, Youyong Li, Junmei Wang, Xiaojie Xu, Lei Xu, Xiaohong Wang, Lei Chen, Tingjun Hou
Drug-likeness analysis of traditional Chinese medicines: 2. Characterization of scaffold architectures for drug-like compounds, non-drug-like compounds, and natural compounds from traditional Chinese medicines. J. Cheminformatics 5 (2013)
Sheng Tian, Youyong Li, Dan Li, Xiaojie Xu, Junmei Wang, Qian Zhang, Tingjun Hou
Modeling Compound-Target Interaction Network of Traditional Chinese Medicines for Type II Diabetes Mellitus: Insight for Polypharmacology and Drug Design. J. Chem. Inf. Model. 53 (7) (2013)
Mingyun Shen, Sheng Tian, Youyong Li, Qian Li, Xiaojie Xu, Junmei Wang, Tingjun Hou
Drug-likeness analysis of traditional Chinese medicines: 1. property distributions of drug-like compounds, non-drug-like compounds and natural compounds from traditional Chinese medicines. J. Cheminformatics 4 (2012)
Junmei Wang, Tingjun Hou
Develop and Test a Solvent Accessible Surface Area-Based Model in Conformational Entropy Calculations. J. Chem. Inf. Model. 52 (5) (2012)
Dongyue Cao, Junmei Wang, Rui Zhou, Youyong Li, Huidong Yu, Tingjun Hou
ADMET Evaluation in Drug Discovery. 11. PharmacoKinetics Knowledge Base (PKKB): A Comprehensive Database of Pharmacokinetic and Toxic Properties for Drugs. J. Chem. Inf. Model. 52 (5) (2012)
Qian Zhang, Wei Zhang, Youyong Li, Junmei Wang, Liling Zhang, Tingjun Hou
A rule-based algorithm for automatic bond type perception. J. Cheminformatics 4 (2012)
Junmei Wang, Tingjun Hou
Application of molecular dynamics simulations in molecular property prediction II: Diffusion coefficient. J. Comput. Chem. 32 (16) (2011)
Tingjun Hou, Junmei Wang, Youyong Li, Wei Wang
Assessing the Performance of the MM/PBSA and MM/GBSA Methods. 1. The Accuracy of Binding Free Energy Calculations Based on Molecular Dynamics Simulations. J. Chem. Inf. Model. 51 (1) (2011)
Tingjun Hou, Junmei Wang, Youyong Li, Wei Wang
Assessing the performance of the molecular mechanics/Poisson Boltzmann surface area and molecular mechanics/generalized Born surface area methods. II. The accuracy of ranking poses generated from docking. J. Comput. Chem. 32 (5) (2011)
Junmei Wang, Tingjun Hou
Drug and Drug Candidate Building Block Analysis. J. Chem. Inf. Model. 50 (1) (2010)
Junmei Wang, Tingjun Hou, Xiaojie Xu
Aqueous Solubility Prediction Based on Weighted Atom Type Counts and Solvent Accessible Surface Areas. J. Chem. Inf. Model. 49 (3) (2009)
Tingjun Hou, Junmei Wang, Wei Zhang, Xiaojie Xu
ADME Evaluation in Drug Discovery, 7. Prediction of Oral Absorption by Correlation and Classification. J. Chem. Inf. Model. 47 (1) (2007)
Jian-zhong Chen, Junmei Wang, Xiang-Qun Xie
GPCR Structure-Based Virtual Screening Approach for CB2 Antagonist Search. J. Chem. Inf. Model. 47 (4) (2007)
Tingjun Hou, Junmei Wang, Youyong Li
ADME Evaluation in Drug Discovery, 8. The Prediction of Human Intestinal Absorption by a Support Vector Machine. J. Chem. Inf. Model. 47 (6) (2007)
Tingjun Hou, Junmei Wang, Wei Zhang, Xiaojie Xu
ADME Evaluation in Drug Discovery, 6. Can Oral Bioavailability in Humans Be Effectively Predicted by Simple Molecular Property-Based Rules? J. Chem. Inf. Model. 47 (2) (2007)
Junmei Wang, George Krudy, Tingjun Hou, Wei Zhang, George Holland, Xiaojie Xu
Development of Reliable Aqueous Solubility Models and Their Application in Druglike Analysis. J. Chem. Inf. Model. 47 (4) (2007)
Junmei Wang, Wynne Hsu, Mong-Li Lee, Chang Sheng
A Partition-Based Approach to Graph Mining. ICDE (2006)
Junmei Wang, George Krudy, Xiang-Qun Xie, Chengde Wu, George Holland
Genetic Algorithm-Optimized QSPR Models for Bioavailability, Protein Binding, and Urinary Excretion. J. Chem. Inf. Model. 46 (6) (2006)
Junmei Wang, Romain M. Wolf, James W. Caldwell, Peter A. Kollman, David A. Case
Junmei Wang, Romain M. Wolf, James W. Caldwell, Peter A. Kollman, and David A. Case, "Development and testing of a general amber force field" Journal of Computational Chemistry(2004) 25(9) 1157-1174. J. Comput. Chem. 26 (1) (2005)
Junmei Wang, Wynne Hsu, Mong-Li Lee
Mining Generalized Spatio-Temporal Patterns. DASFAA (2005)
Junmei Wang, Wynne Hsu, Mong-Li Lee
A framework for mining topological patterns in spatio-temporal databases. CIKM (2005)
Junmei Wang, Wynne Hsu, Mong-Li Lee
Discovering Geographical Features for Location-Based Services. DASFAA (2004)
Junmei Wang, Wynne Hsu, Mong-Li Lee, Jason Tsong-Li Wang
FlowMiner: Finding Flow Patterns in Spatio-Temporal Databases. ICTAI (2004)
Junmei Wang, Romain M. Wolf, James W. Caldwell, Peter A. Kollman, David A. Case
Development and testing of a general amber force field. J. Comput. Chem. 25 (9) (2004)
Yong Duan, Chun Wu, Shibasish Chowdhury, Mathew C. Lee, Guoming Xiong, Wei Zhang, Rong Yang, Piotr Cieplak, Ray Luo, Taisung Lee, James W. Caldwell, Junmei Wang, Peter A. Kollman
A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations. J. Comput. Chem. 24 (16) (2003)
Junmei Wang, Peter A. Kollman
Automatic parameterization of force field by systematic search and genetic algorithms. J. Comput. Chem. 22 (12) (2001)
Junmei Wang, Piotr Cieplak, Peter A. Kollman
How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules? J. Comput. Chem. 21 (12) (2000)
Tingjun Hou, Junmei Wang, N. Liao, Xiaojie Xu
Applications of Genetic Algorithms on the Structure-Activity Relationship Analysis of Some Cinnamamides. J. Chem. Inf. Comput. Sci. 39 (5) (1999)