Yafeng Deng

Publication Activity (10 Years)

Years Active: 2005-2024
Publications (10 Years): 34

Top Topics

Relative Distance

Scoring Functions

Top Venues

J. Chem. Inf. Model.

Briefings Bioinform.

Nat. Comput. Sci.

Publications

Lijun Liu, Jiali Yang, Jianfei Song, Xinglin Yang, Lele Niu, Zeqi Cai, Hui Shi, Tingjun Hou, Chang-Yu Hsieh, Weiran Shen, Yafeng Deng
AAVDiff: Experimental Validation of Enhanced Viability and Diversity in Recombinant Adeno-Associated Virus (AAV) Capsids through Diffusion Generation. CoRR (2024)
Xin Ma, Chang Liu, Chunyu Xie, Long Ye, Yafeng Deng, Xiangyang Ji
Disjoint Masking With Joint Distillation for Efficient Masked Image Modeling. IEEE Trans. Multim. 26 (2024)
Mingyang Wang, Zhengjian Wu, Jike Wang, Gaoqi Weng, Yu Kang, Peichen Pan, Dan Li, Yafeng Deng, Xiaojun Yao, Zhitong Bing, Chang-Yu Hsieh, Tingjun Hou
Genetic Algorithm-Based Receptor Ligand: A Genetic Algorithm-Guided Generative Model to Boost the Novelty and Drug-Likeness of Molecules in a Sampling Chemical Space. J. Chem. Inf. Model. 64 (4) (2024)
Chao Shen, Jianfei Song, Chang-Yu Hsieh, Dong-Sheng Cao, Yu Kang, Wenling Ye, Zhenxing Wu, Jike Wang, Odin Zhang, Xujun Zhang, Hao Zeng, Heng Cai, Yu Chen, Linkang Chen, Hao Luo, Xinda Zhao, Tianye Jian, Tong Chen, Dejun Jiang, Mingyang Wang, Qing Ye, Jialu Wu, Hongyan Du, Hui Shi, Yafeng Deng, Tingjun Hou
DrugFlow: An AI-Driven One-Stop Platform for Innovative Drug Discovery. J. Chem. Inf. Model. 64 (14) (2024)
Yafeng Deng, Young-June Choi
A Reinforcement Learning Assisted Relative Distance based MAC in Vehicular Networks. ICAIIC (2023)
Xin Ma, Chang Liu, Chunyu Xie, Long Ye, Yafeng Deng, Xiangyang Ji
Disjoint Masking with Joint Distillation for Efficient Masked Image Modeling. CoRR (2023)
Odin Zhang, Tianyue Wang, Gaoqi Weng, Dejun Jiang, Ning Wang, Xiaorui Wang, Huifeng Zhao, Jialu Wu, Ercheng Wang, Guangyong Chen, Yafeng Deng, Peichen Pan, Yu Kang, Chang-Yu Hsieh, Tingjun Hou
Learning on topological surface and geometric structure for 3D molecular generation. Nat. Comput. Sci. 3 (10) (2023)
Xujun Zhang, Chao Shen, Tianyue Wang, Yafeng Deng, Yu Kang, Dan Li, Tingjun Hou, Peichen Pan
ML-PLIC: a web platform for characterizing protein-ligand interactions and developing machine learning-based scoring functions. Briefings Bioinform. 24 (5) (2023)
ChengLong Yan, Yafeng Deng, Young-June Choi
A Novel Deep Reinforcement Learning Based Clustering Scheme for WSN. GLOBECOM (2023)
Gaoqi Weng, Xuanyan Cai, Dong-Sheng Cao, Hongyan Du, Chao Shen, Yafeng Deng, Qiaojun He, Bo Yang, Dan Li, Tingjun Hou
PROTAC-DB 2.0: an updated database of PROTACs. Nucleic Acids Res. 51 (D1) (2023)
Zhenxing Wu, Jihong Chen, Yitong Li, Yafeng Deng, Haitao Zhao, Chang-Yu Hsieh, Tingjun Hou
From Black Boxes to Actionable Insights: A Perspective on Explainable Artificial Intelligence for Scientific Discovery. J. Chem. Inf. Model. 63 (24) (2023)
Yanqing Duan, Li Fu, Xiao-Chen Zhang, Teng-Zhi Long, Yuan-Hang He, Zhao-Qian Liu, Ai-Ping Lu, Yafeng Deng, Chang-Yu Hsieh, Tingjun Hou, Dong-Sheng Cao
Prediction by Transferring Knowledge from Low-Fidelity Data. J. Chem. Inf. Model. 63 (8) (2023)
Chunyu Xie, Heng Cai, Jincheng Li, Fanjing Kong, Xiaoyu Wu, Jianfei Song, Henrique Morimitsu, Lin Yao, Dexin Wang, Xiangzheng Zhang, Dawei Leng, Baochang Zhang, Xiangyang Ji, Yafeng Deng
CCMB: A Large-scale Chinese Cross-modal Benchmark. ACM Multimedia (2023)
Haotian Zhang, Jintu Zhang, Huifeng Zhao, Dejun Jiang, Yafeng Deng
Infinite Physical Monkey: Do Deep Learning Methods Really Perform Better in Conformation Generation? CoRR (2023)
Odin Zhang, Jintu Zhang, Jieyu Jin, Xujun Zhang, Renling Hu, Chao Shen, Hanqun Cao, Hongyan Du, Yu Kang, Yafeng Deng, Furui Liu, Guangyong Chen, Chang-Yu Hsieh, Tingjun Hou
ResGen is a pocket-aware 3D molecular generation model based on parallel multiscale modelling. Nat. Mac. Intell. 5 (9) (2023)
Kai-Yue Ji, Chong Liu, Zhao-Qian Liu, Yafeng Deng, Tingjun Hou, Dong-Sheng Cao
Comprehensive assessment of nine target prediction web services: which should we choose for target fishing? Briefings Bioinform. 24 (2) (2023)
Xiaodan Yin, Xiaorui Wang, Yuquan Li, Jike Wang, Yuwei Wang, Yafeng Deng, Tingjun Hou, Huanxiang Liu, Pei Luo, Xiaojun Yao
CODD-Pred: A Web Server for Efficient Target Identification and Bioactivity Prediction of Small Molecules. J. Chem. Inf. Model. 63 (20) (2023)
Xixi Yang, Li Fu, Yafeng Deng, Yuansheng Liu, Dongsheng Cao, Xiangxiang Zeng
GPMO: Gradient Perturbation-Based Contrastive Learning for Molecule Optimization. IJCAI (2023)
Lei Wang, Shao-Hua Shi, Hui Li, Xiangxiang Zeng, Su-You Liu, Zhao-Qian Liu, Yafeng Deng, Ai-Ping Lu, Tingjun Hou, Dong-Sheng Cao
Reducing false positive rate of docking-based virtual screening by active learning. Briefings Bioinform. 24 (1) (2023)
Xujun Zhang, Odin Zhang, Chao Shen, Wanglin Qu, Shicheng Chen, Hanqun Cao, Yu Kang, Zhe Wang, Ercheng Wang, Jintu Zhang, Yafeng Deng, Furui Liu, Tianyue Wang, Hongyan Du, Langcheng Wang, Peichen Pan, Guangyong Chen, Chang-Yu Hsieh, Tingjun Hou
Efficient and accurate large library ligand docking with KarmaDock. Nat. Comput. Sci. 3 (9) (2023)
Minjian Yang, Hanyu Sun, Xue Liu, Xi Xue, Yafeng Deng, Xiaojian Wang
CMGN: a conditional molecular generation net to design target-specific molecules with desired properties. Briefings Bioinform. 24 (4) (2023)
Long Yu, Zhicong Luo, Huanyong Liu, Deng Lin, Hongzhu Li, Yafeng Deng
TripleRE: Knowledge Graph Embeddings via Tripled Relation Vectors. CoRR (2022)
Mingyang Wang, Jike Wang, Gaoqi Weng, Yu Kang, Peichen Pan, Dan Li, Yafeng Deng, Honglin Li, Chang-Yu Hsieh, Tingjun Hou
ReMODE: a deep learning-based web server for target-specific drug design. J. Cheminformatics 14 (1) (2022)
Chunyu Xie, Heng Cai, Jianfei Song, Jincheng Li, Fanjing Kong, Xiaoyu Wu, Henrique Morimitsu, Lin Yao, Dexin Wang, Dawei Leng, Xiangyang Ji, Yafeng Deng
Zero and R2D2: A Large-scale Chinese Cross-modal Benchmark and A Vision-Language Framework. CoRR (2022)
Hongzhu Li, Xiangrui Gao, Yafeng Deng
StarGraph: A Coarse-to-Fine Representation Method for Large-Scale Knowledge Graph. CoRR (2022)
Jialu Wu, Junmei Wang, Zhenxing Wu, Shengyu Zhang, Yafeng Deng, Yu Kang, Dong-Sheng Cao, Chang-Yu Hsieh, Tingjun Hou
ALipSol: An Attention-Driven Mixture-of-Experts Model for Lipophilicity and Solubility Prediction. J. Chem. Inf. Model. 62 (23) (2022)
Lin Yao, Jianfei Song, Ruizhuo Xu, Yingfang Yang, Zijian Chen, Yafeng Deng
WaBERT: A Low-resource End-to-end Model for Spoken Language Understanding and Speech-to-BERT Alignment. CoRR (2022)
Gengyun Jia, Meisong Zheng, Chuanrui Hu, Xin Ma, Yuting Xu, Luoqi Liu, Yafeng Deng, Ran He
Inconsistency-Aware Wavelet Dual-Branch Network for Face Forgery Detection. IEEE Trans. Biom. Behav. Identity Sci. 3 (3) (2021)
Jian Zhao, Gang Wang, Jianan Li, Lei Jin, Nana Fan, Min Wang, Xiaojuan Wang, Ting Yong, Yafeng Deng, Yandong Guo, Shiming Ge, Guodong Guo
The 2nd Anti-UAV Workshop & Challenge: Methods and Results. CoRR (2021)
Dong-jin Lee, Yafeng Deng, Young-June Choi
Back-off Improvement By Using Q-learning in IEEE 802.11p Vehicular Network. ICTC (2020)
Yafeng Deng, Dohyung Kim, Zhetao Li, Young-June Choi
Implementing Distributed TDMA Using Relative Distance in Vehicular Networks. IEEE Trans. Veh. Technol. 69 (7) (2020)
Jiankang Deng, Jia Guo, Debing Zhang, Yafeng Deng, Xiangju Lu, Song Shi
Lightweight Face Recognition Challenge. ICCV Workshops (2019)
Yafeng Deng, Young-June Choi
Broadcast MAC protocol using relative distance for periodic safety messages in vehicular networks. ICOIN (2018)
Tingrui Pei, Yafeng Deng, Zhetao Li, Gengming Zhu, Gaofeng Pan, Youngjune Choi, Hiroo Sekiya
A throughput aware with collision-free MAC for wireless LANs. Sci. China Inf. Sci. 59 (2) (2016)
Lichao Huang, Yi Yang, Yafeng Deng, Yinan Yu
DenseBox: Unifying Landmark Localization with End to End Object Detection. CoRR (2015)
Jingtuo Liu, Yafeng Deng, Tao Bai, Chang Huang
Targeting Ultimate Accuracy: Face Recognition via Deep Embedding. CoRR (2015)
Hauchun Tan, Yafeng Deng, Hao Chen
Extracting Auto-Correlation Feature for License Plate Detection Based on AdaBoost. IDEAL (2008)
Jun Zhou, Guangda Su, Chunhong Jiang, Yafeng Deng, Congcong Li
A face and fingerprint identity authentication system based on multi-route detection. Neurocomputing 70 (4-6) (2007)
Yafeng Deng, Guangda Su, Jun Zhou, Bo Fu
Fast Face Detection Integrating Motion Energy into a Cascade-Structured Classifier. ICMLC (2005)
Jun Zhou, Guangda Su, Yafeng Deng, Kai Meng, Congcong Li
A Dynamic Face and Fingerprint Fusion System for Identity Authentication. CIS (2) (2005)