Narayan Ganesan

Publication Activity (10 Years)

Years Active: 2005-2018
Publications (10 Years): 5

Top Topics

Graphics Processors

Gpu Implementation

Computing Platform

Top Venues

IPDPS Workshops

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Hanyu Jiang, Narayan Ganesan, Yu-Dong Yao
CUDAMPF++: A Proactive Resource Exhaustion Scheme for Accelerating Homologous Sequence Search on CUDA-Enabled GPU. IEEE Trans. Parallel Distributed Syst. 29 (10) (2018)
Hanyu Jiang, Narayan Ganesan, Yu-Dong Yao
CUDAMPF++: A Proactive Resource Exhaustion Scheme for Accelerating Homologous Sequence Search on CUDA-enabled GPU. CoRR (2017)
Narayan Ganesan, Jie Li, Vishakha Sharma, Hanyu Jiang, Adriana B. Compagnoni
Process Simulation of Complex Biological Pathways in Physical Reactive Space and Reformulated for Massively Parallel Computing Platforms. IEEE ACM Trans. Comput. Biol. Bioinform. 13 (2) (2016)
Hanyu Jiang, Narayan Ganesan
CUDAMPF: a multi-tiered parallel framework for accelerating protein sequence search in HMMER on CUDA-enabled GPU. BMC Bioinform. 17 (2016)
Hanyu Jiang, Morisa Manzella, Luka Djapic, Narayan Ganesan
Computational Framework for in-Silico Study of Virtual Cell Biology via Process Simulation and Multiscale Modeling. BCB (2016)
Hanyu Jiang, Narayan Ganesan
Fine-Grained Acceleration of HMMER 3.0 via Architecture-Aware Optimization on Massively Parallel Processors. IPDPS Workshops (2015)
Jie Li, Amin Salighehdar, Narayan Ganesan
Simulation of Complex Biochemical Pathways in 3D Process Space via Heterogeneous Computing Platform: Preliminary Results. ARC (2014)
Jie Li, Amin Salighehdar, Narayan Ganesan
Process Simulation of Complex Biochemical Pathways in Explicit 3D Space Enabled by Heterogeneous Computing Platform. IPDPS Workshops (2014)
Narayan Ganesan, Tzyh Jong Tarn
Achieving decoherence suppression in open quantum systems by utilizing the model of environmental interactions. ACC (2013)
Michela Taufer, Narayan Ganesan, Sandeep Patel
GPU-Enabled Macromolecular Simulation: Challenges and Opportunities. Comput. Sci. Eng. 15 (1) (2013)
Jie Li, Vishakha Sharma, Narayan Ganesan, Adriana B. Compagnoni
Simulation and study of large-scale bacteria-materials interactions via BioScape enabled by GPUs. BCB (2012)
Narayan Ganesan, Brad A. Bauer, Timothy R. Lucas, Sandeep Patel, Michela Taufer
Structural, dynamic, and electrostatic properties of fully hydrated DMPC bilayers from molecular dynamics simulations accelerated with graphical processing units (GPUs). J. Comput. Chem. 32 (14) (2011)
Narayan Ganesan, Michela Taufer, Brad A. Bauer, Sandeep Patel
FENZI: GPU-Enabled Molecular Dynamics Simulations of Large Membrane Regions Based on the CHARMM Force Field and PME. IPDPS Workshops (2011)
Narayan Ganesan, Roger D. Chamberlain, Jeremy Buhler, Michela Taufer
Accelerating HMMER on GPUs by implementing hybrid data and task parallelism. BCB (2010)
Roger D. Chamberlain, Narayan Ganesan
Sorting on architecturally diverse computer systems. SC-HPRCTA (2009)
Narayan Ganesan, Tzyh Jong Tarn
Quantum internal model principle and enhanced disturbance decoupling. CDC (2007)
Narayan Ganesan, Tzyh Jong Tarn
Control of decoherence in open quantum systems using feedback. CDC/ECC (2005)