Kay Hamacher

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 33

Top Topics

Permutation Tests

Visual Analysis

Top Venues

J. Chem. Inf. Model.

Datenschutz und Datensicherheit

Publications

Patrick Kunzmann, Jan Hendrik Krumbach, Andrea Saponaro, Anna Moroni, Gerhard Thiel, Kay Hamacher
Anisotropic Network Analysis of Open/Closed HCN4 Channel Advocates Asymmetric Subunit Cooperativity in cAMP Modulation of Gating. J. Chem. Inf. Model. 64 (12) (2024)
Patrick Kunzmann, Tom David Müller, Maximilian Greil, Jan Hendrik Krumbach, Jacob Marcel Anter, Daniel Bauer, Faisal Islam, Kay Hamacher
Biotite: new tools for a versatile Python bioinformatics library. BMC Bioinform. 24 (1) (2023)
Felix Nikolaus Wirth, Tobias Kussel, Armin Müller, Kay Hamacher, Fabian Prasser
EasySMPC: a simple but powerful no-code tool for practical secure multiparty computation. BMC Bioinform. 23 (1) (2022)
Patrick Kunzmann, Jacob Marcel Anter, Kay Hamacher
Adding hydrogen atoms to molecular models via fragment superimposition. Algorithms Mol. Biol. 17 (1) (2022)
Timm Birka, Kay Hamacher, Tobias Kussel, Helen Möllering, Thomas Schneider
SPIKE: Secure and Private Investigation of the Kidney Exchange problem. CoRR (2022)
Sebastian Stammler, Tobias Kussel, Phillipp Schoppmann, Florian Stampe, Galina Tremper, Stefan Katzenbeisser, Kay Hamacher, Martin Lablans
Mainzelliste SecureEpiLinker (MainSEL): privacy-preserving record linkage using secure multi-party computation. Bioinform. 38 (6) (2022)
Kay Hamacher, Tobias Kussel, Thomas Schneider, Oleksandr Tkachenko
PEA: Practical private epistasis analysis using MPC. IACR Cryptol. ePrint Arch. 2022 (2022)
Timm Birka, Kay Hamacher, Tobias Kussel, Helen Möllering, Thomas Schneider
SPIKE: secure and private investigation of the kidney exchange problem. BMC Medical Informatics Decis. Mak. 22 (1) (2022)
Frank Keul, Kay Hamacher
Consistent Quantification of Complex Dynamics via a Novel Statistical Complexity Measure. Entropy 24 (4) (2022)
Reto Wettstein, Tobias Kussel, Hauke Hund, Christian Fegeler, Martin Dugas, Kay Hamacher
Secure Multi-Party Computation Based Distributed Feasibility Queries - A HiGHmed Use Case. GMDS (2022)
Kay Hamacher, Tobias Kussel, Tatiana von Landesberger, Tom Baumgartl, Markus Höhn, Simone Scheithauer, Michael Marschollek, Antje Wulff
Fallzahlen, Re-Identifikation und der technische Datenschutz. Datenschutz und Datensicherheit 46 (3) (2022)
Kay Hamacher, Tobias Kussel, Thomas Schneider, Oleksandr Tkachenko
PEA: Practical Private Epistasis Analysis Using MPC. ESORICS (3) (2022)
Adrian Worring, Benjamin E. Mayer, Kay Hamacher
Genetic algorithm niching by (Quasi-)infinite memory. GECCO (2021)
Kay Hamacher, Stefan Katzenbeisser, Tobias Kussel, Sebastian Stammler
Genomische Daten und der Datenschutz. Datenschutz und Datensicherheit 44 (2) (2020)
Michael Schmidt, Kay Hamacher, Felix Reinhardt, Thea S. Lotz, Florian Groher, Beatrix Suess, Sven Jager
SICOR: Subgraph Isomorphism Comparison of RNA Secondary Structures. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (6) (2020)
Patrick Kunzmann, Benjamin E. Mayer, Kay Hamacher
Substitution matrix based color schemes for sequence alignment visualization. BMC Bioinform. 21 (1) (2020)
Johannes Buchmann, Matthias Geihs, Kay Hamacher, Stefan Katzenbeisser, Sebastian Stammler
Long-term integrity protection of genomic data. EURASIP J. Inf. Secur. 2019 (2019)
Kay Hamacher
Hybridization of Stochastic Tunneling with (Quasi)-Infinite Time-Horizon Tabu Search. HM (2019)
Patrick Kunzmann, Kay Hamacher
Biotite: a unifying open source computational biology framework in Python. BMC Bioinform. 19 (1) (2018)
Maximilian J. Dombrowsky, Sven Jager, Benjamin Schiller, Benjamin E. Mayer, Sebastian Stammler, Kay Hamacher
StreaMD: Advanced analysis of molecular dynamics using R. J. Comput. Chem. 39 (21) (2018)
Oleksandr Tkachenko, Christian Weinert, Thomas Schneider, Kay Hamacher
Large-Scale Privacy-Preserving Statistical Computations for Distributed Genome-Wide Association Studies. AsiaCCS (2018)
Michael Schmidt, Kay Hamacher
hoDCA: higher order direct-coupling analysis. BMC Bioinform. 19 (1) (2018)
Christine Groß, Kay Hamacher, Katja Schmitz, Sven Jager
Cleavage Product Accumulation Decreases the Activity of Cutinase during PET Hydrolysis. J. Chem. Inf. Model. 57 (2) (2017)
Patrick Boba, Kay Hamacher
TransferEntropyPT: An R Package to Assess Transfer Entropies via Permutation Tests. CMSB (2017)
Daniel Demmler, Kay Hamacher, Thomas Schneider, Sebastian Stammler
Privacy-Preserving Whole-Genome Variant Queries. CANS (2017)
Frank Keul, Martin Hess, Michael Goesele, Kay Hamacher
PFASUM: a substitution matrix from Pfam structural alignments. BMC Bioinform. 18 (1) (2017)
Sven Jager, Benjamin Schiller, Philipp Babel, Malte Blumenroth, Thorsten Strufe, Kay Hamacher
: algorithms for analyzing coarse grained RNA dynamics based on Markov models of connectivity-graphs. Algorithms Mol. Biol. 12 (1) (2017)
Kay Hamacher
Using Lisp Macro-Facilities for Transferable Statistical Tests. ELS (2016)
Martin Hess, Daniel Jente, Josef Wiemeyer, Kay Hamacher, Michael Goesele
Visual Analysis and Comparison of Multiple Sequence Alignments. VCBM/MedViz (2016)
Sebastian Stammler, Stefan Katzenbeisser, Kay Hamacher
Correcting Finite Sampling Issues in Entropy l-diversity. PSD (2016)
Sven Jager, Benjamin Schiller, Thorsten Strufe, Kay Hamacher
StreAM- T_g : Algorithms for Analyzing Coarse Grained RNA Dynamics Based on Markov Models of Connectivity-Graphs. WABI (2016)
Martin Hess, Frank Keul, Michael Goesele, Kay Hamacher
Addressing inaccuracies in BLOSUM computation improves homology search performance. BMC Bioinform. 17 (2016)
Paul Manns, Kay Hamacher
Evolving Smoothing Kernels for Global Optimization. EvoApplications (2) (2016)
Christoph Scholz, Sabine Knorr, Kay Hamacher, Boris Schmidt
DOCKTITE - A Highly Versatile Step-by-Step Workflow for Covalent Docking and Virtual Screening in the Molecular Operating Environment. J. Chem. Inf. Model. 55 (2) (2015)
Benjamin Schiller, Sven Jager, Kay Hamacher, Thorsten Strufe
StreaM - A Stream-Based Algorithm for Counting Motifs in Dynamic Graphs. AlCoB (2015)
Benjamin E. Mayer, Kay Hamacher
Stochastic tunneling transformation during selection in genetic algorithm. GECCO (2014)
Patrick Boba, Stefan Gries, Kay Hamacher
R as an Integration Tool in High Performance Computing - Lessons Learned. GI-Jahrestagung (2014)
Martin Hess, Josef Wiemeyer, Kay Hamacher, Michael Goesele
Serious Games for Solving Protein Sequence Alignments - Combining Citizen Science and Gaming. GameDays (2014)
Kay Hamacher
Online Performance Measures for Metaheuristic Optimization. Hybrid Metaheuristics (2014)
Martin Hess, Sebastian Bremm, Stephanie Weissgraeber, Kay Hamacher, Michael Goesele, Josef Wiemeyer, Tatiana von Landesberger
Visual Exploration of Parameter Influence on Phylogenetic Trees. IEEE Computer Graphics and Applications 34 (2) (2014)
Michael Waechter, Kathrin Jaeger, Daniel Thuerck, Stephanie Weissgraeber, Sven Widmer, Michael Goesele, Kay Hamacher
Using graphics processing units to investigate molecular coevolution. Concurr. Comput. Pract. Exp. 26 (6) (2014)
Nikolaos P. Karvelas, Andreas Peter, Stefan Katzenbeisser, Erik Tews, Kay Hamacher
Privacy-Preserving Whole Genome Sequence Processing through Proxy-Aided ORAM. WPES (2014)
Olav Lenz, Frank Keul, Sebastian Bremm, Kay Hamacher, Tatiana von Landesberger
Visual analysis of patterns in multiple amino acid mutation graphs. IEEE VAST (2014)
Susanne Pape, Franziska Hoffgaard, Mirjam Dür, Kay Hamacher
Distance dependency and minimum amino acid alphabets for decoy scoring potentials. J. Comput. Chem. 34 (1) (2013)
Kay Hamacher, Jean-Pierre Hubaux, Gene Tsudik
Genomic Privacy (Dagstuhl Seminar 13412). Dagstuhl Reports 3 (10) (2013)
Martin Franz, Björn Deiseroth, Kay Hamacher, Somesh Jha, Stefan Katzenbeisser, Heike Schröder
Secure computations on non-integer values with applications to privacy-preserving sequence analysis. Inf. Secur. Tech. Rep. 17 (3) (2013)
Kay Hamacher
A New Hybrid Metaheuristic - Combining Stochastic Tunneling and Energy Landscape Paving. Hybrid Metaheuristics (2013)
Micha Ober, Stefan Katzenbeisser, Kay Hamacher
Structure and Anonymity of the Bitcoin Transaction Graph. Future Internet 5 (2) (2013)
Kay Hamacher
Efficient quantification of the importance of contacts for the dynamical stability of proteins. J. Comput. Chem. 32 (5) (2011)
Michael Waechter, Kay Hamacher, Franziska Hoffgaard, Sven Widmer, Michael Goesele
Is Your Permutation Algorithm Unbiased for n ≠ 2 m ? PPAM (1) (2011)
Kay Hamacher, Stefan Katzenbeisser
Public security: simulations need to replace conventional wisdom. NSPW (2011)
Martin Franz, Björn Deiseroth, Kay Hamacher, Somesh Jha, Stefan Katzenbeisser, Heike Schröder
Towards Secure Bioinformatics Services (Short Paper). Financial Cryptography (2011)
Sebastian Bremm, Tatiana von Landesberger, Martin Hess, Tobias Schreck, Philipp Weil, Kay Hamacher
Interactive visual comparison of multiple trees. IEEE VAST (2011)
Martin Franz, Björn Deiseroth, Kay Hamacher, Somesh Jha, Stefan Katzenbeisser, Heike Schröder
Secure computations on non-integer values. WIFS (2010)
Daniel Reker, Stefan Katzenbeisser, Kay Hamacher
Computation of mutual information from Hidden Markov Models. Comput. Biol. Chem. 34 (5-6) (2010)
Sebastian Bremm, Tobias Schreck, Patrick Boba, Stephanie Held, Kay Hamacher
Computing and visually analyzing mutual information in molecular co-evolution. BMC Bioinform. 11 (2010)
Franziska Hoffgaard, Philipp Weil, Kay Hamacher
BioPhysConnectoR: Connecting Sequence Information and Biophysical Models. BMC Bioinform. 11 (2010)
Kay Hamacher
Protein Domain Phylogenies - Information Theory and Evolutionary Dynamics. BIOINFORMATICS (2010)
Patrick Boba, Philipp Weil, Franziska Hoffgaard, Kay Hamacher
Intra- and Inter-Molecular Coevolution: The Case of HIV1 Protease and Reverse Transcriptase. BIOSTEC (Selected Papers) (2010)
Patrick Boba, Philipp Weil, Franziska Hoffgaard, Kay Hamacher
Co-evolution in HIV Enzymes. BIOINFORMATICS (2010)
Martin Franz, Björn Deiseroth, Kay Hamacher, Somesh Jha, Stefan Katzenbeisser, Heike Schröder
Secure Computations on Non-Integer Values. IACR Cryptol. ePrint Arch. 2010 (2010)
Kay Hamacher
Efficient perturbation analysis of elastic network models - Application to acetylcholinesterase of T. californica. J. Comput. Phys. 229 (19) (2010)
Philipp Weil, Franziska Hoffgaard, Kay Hamacher
Estimating sufficient statistics in co-evolutionary analysis by mutual information. Comput. Biol. Chem. 33 (6) (2009)
Jens Ackermann, Paul Baecher, Thorsten Franzel, Michael Goesele, Kay Hamacher
Massively-Parallel Simulation of Biochemical Systems. GI Jahrestagung (2009)
Kay Hamacher, Michael Goesele
Vorwort zum Workshop "Massively parallel computational biology on GPUs". GI Jahrestagung (2009)
Kay Hamacher
Information theoretical measures to analyze trajectories in rational molecular design. J. Comput. Chem. 28 (16) (2007)
Kay Hamacher
Adaptive extremal optimization by detrended fluctuation analysis. J. Comput. Phys. 227 (2) (2007)
Kay Hamacher, Joanna Trylska, James Andrew McCammon
Dependency Map of Proteins in the Small Ribosomal Subunit. PLoS Comput. Biol. 2 (2) (2006)