Joanna Trylska

Publication Activity (10 Years)

Years Active: 2006-2023
Publications (10 Years): 5

Top Topics

High Throughput Experimental

Complex Biological Systems

Molecular Interactions

Computational Methods

Top Venues

PLoS Comput. Biol.

RAIRO Oper. Res.

J. Chem. Inf. Model.

Publications

Natalia Ostrowska, Michael Feig, Joanna Trylska
Varying molecular interactions explain aspects of crowder-dependent enzyme function of a viral protease. PLoS Comput. Biol. 19 (4) (2023)
Tomasz Pienko, Joanna Trylska
Correction: Extracellular loops of BtuB facilitate transport of vitamin B12 through the outer membrane of E. coli. PLoS Comput. Biol. 17 (12) (2021)
Tomasz Pienko, Joanna Trylska
Extracellular loops of BtuB facilitate transport of vitamin B12 through the outer membrane of E. coli. PLoS Comput. Biol. 16 (7) (2020)
Tomasz Pienko, Joanna Trylska
Computational Methods Used to Explore Transport Events in Biological Systems. J. Chem. Inf. Model. 59 (5) (2019)
Marta Kulik, Joanna Trylska
Structural and energetic comparison of the complexes of aminoglycosides with the model of the ribosomal A-site. RAIRO Oper. Res. 50 (2) (2016)
Julia Romanowska, James Andrew McCammon, Joanna Trylska
Understanding the Origins of Bacterial Resistance to Aminoglycosides through Molecular Dynamics Mutational Study of the Ribosomal A-Site. PLoS Comput. Biol. 7 (7) (2011)
Maciej Dlugosz, Pawel Zielinski, Joanna Trylska
Brownian dynamics simulations on CPU and GPU with BD_BOX. J. Comput. Chem. 32 (12) (2011)
Filip Leonarski, Fabio Trovato, Valentina Tozzini, Joanna Trylska
Genetic Algorithm Optimization of Force Field Parameters: Application to a Coarse-Grained Model of RNA. EvoBio (2011)
Piotr Setny, Joanna Trylska
Search for Novel Aminoglycosides by Combining Fragment-Based Virtual Screening and 3D-QSAR Scoring. J. Chem. Inf. Model. 49 (2) (2009)
Adam Górecki, Marcin Szypowski, Maciej Dlugosz, Joanna Trylska
RedMD - Reduced molecular dynamics package. J. Comput. Chem. 30 (14) (2009)
Magdalena Gruziel, Pawel Grochowski, Joanna Trylska
The Poisson-Boltzmann model for tRNA: Assessment of the calculation set-up and ionic concentration cutoff. J. Comput. Chem. 29 (12) (2008)
Karine Voltz, Joanna Trylska, Valentina Tozzini, Vandana Kurkal-Siebert, Jörg Langowski, Jeremy C. Smith
Coarse-grained force field for the nucleosome from self-consistent multiscaling. J. Comput. Chem. 29 (9) (2008)
Kay Hamacher, Joanna Trylska, James Andrew McCammon
Dependency Map of Proteins in the Small Ribosomal Subunit. PLoS Comput. Biol. 2 (2) (2006)