Karen E. Ross

Publication Activity (10 Years)

Years Active: 2015-2023
Publications (10 Years): 8

Top Topics

Interaction Networks

Textual Documents

Relation Extraction

Top Venues

Database J. Biol. Databases Curation

PLoS Comput. Biol.

ICBO/BioCreative

Publications

Karen E. Ross, Guolin Zhang, Cuneyt Akcora, Yu Lin, Bin Fang, John M. Koomen, Eric B. Haura, Mark Grimes
Network models of protein phosphorylation, acetylation, and ubiquitination connect metabolic and cell signaling pathways in lung cancer. PLoS Comput. Biol. 19 (3) (2023)
Andrew Chatr-aryamontri, Lynette Hirschman, Karen E. Ross, Rose Oughtred, Martin Krallinger, Kara Dolinski, Mike Tyers, Tonia Korves, Cecilia N. Arighi
Overview of the COVID-19 text mining tool interactive demonstration track in BioCreative VII. Database J. Biol. Databases Curation 2022 (2022) (2022)
Chuming Chen, Karen E. Ross, Sachin Gavali, Julie E. Cowart, Cathy H. Wu
COVID-19 Knowledge Graph from semantic integration of biomedical literature and databases. Bioinform. 37 (23) (2021)
Hongzhan Huang, Cecilia N. Arighi, Karen E. Ross, Jia Ren, Gang Li, Sheng-Chih Chen, Qinghua Wang, Julie Cowart, K. Vijay-Shanker, Cathy H. Wu
iPTMnet: an integrated resource for protein post-translational modification network discovery. Nucleic Acids Res. 46 (Database-Issue) (2018)
Xu Zhang, Karen E. Ross, Tapan K. Maity, Jake Jaffe, Cathy H. Wu, Udayan Guha
PTM Knowledge Networks and LINCS Multi-Omics Data for Kinase Inhibitor Drug-Analytics in Lung Cancer. BCB (2018)
Samir Gupta, Hayley Dingerdissen, Karen E. Ross, Yu Hu, Cathy H. Wu, Raja Mazumder, K. Vijay-Shanker
DEXTER: Disease-Expression Relation Extraction from Text. Database J. Biol. Databases Curation 2018 (2018)
Karen E. Ross, Darren A. Natale, Cecilia N. Arighi, Sheng-Chih Chen, Hongzhan Huang, Gang Li, Jia Ren, Michael Wang, K. Vijay-Shanker, Cathy H. Wu
Scalable Text Mining Assisted Curation of PTM Proteoforms in the Protein Ontology. ICBO/BioCreative (2016)
Samir Gupta, Karen E. Ross, Catalina O. Tudor, Cathy H. Wu, Carl J. Schmidt, K. Vijay-Shanker
miRiaD: A Text Mining Tool for Detecting Associations of microRNAs with Diseases. J. Biomed. Semant. 7 (2016)
Catalina O. Tudor, Karen E. Ross, Gang Li, K. Vijay-Shanker, Cathy H. Wu, Cecilia N. Arighi
Construction of phosphorylation interaction networks by text mining of full-length articles using the eFIP system. Database J. Biol. Databases Curation 2015 (2015)
Gang Li, Karen E. Ross, Cecilia N. Arighi, Yifan Peng, Cathy H. Wu, K. Vijay-Shanker
miRTex: A Text Mining System for miRNA-Gene Relation Extraction. PLoS Comput. Biol. 11 (9) (2015)