Jooyoung Lee

Publication Activity (10 Years)

Years Active: 1997-2023
Publications (10 Years): 7

Top Topics

Physicochemical Properties

Global Optimization

Top Venues

J. Chem. Inf. Model.

J. Comput. Chem.

Comput. Phys. Commun.

Publications

Jimin Park, InSuk Joung, Keehyoung Joo, Jooyoung Lee
Application of conformational space annealing to the protein structure modeling using cryo-EM maps. J. Comput. Chem. 44 (30) (2023)
InSuk Joung, Jong Yun Kim, Steven P. Gross, Keehyoung Joo, Jooyoung Lee
Conformational Space Annealing explained: A general optimization algorithm, with diverse applications. Comput. Phys. Commun. 223 (2018)
Agnieszka S. Karczynska, Cezary Czaplewski, Pawel Krupa, Magdalena A. Mozolewska, Keehyoung Joo, Jooyoung Lee, Adam Liwo
Ergodicity and model quality in template-restrained canonical and temperature/Hamiltonian replica exchange coarse-grained molecular dynamics simulations of proteins. J. Comput. Chem. 38 (31) (2017)
Seungryong Heo, Juyong Lee, Keehyoung Joo, Hang-Cheol Shin, Jooyoung Lee
Protein Loop Structure Prediction Using Conformational Space Annealing. J. Chem. Inf. Model. 57 (5) (2017)
Juyong Lee, Zhong-Yuan Zhang, Jooyoung Lee, Bernard R. Brooks, Yong-Yeol Ahn
Link community detection through global optimization and the inverse resolution limit of partition density. CoRR (2016)
Magdalena A. Mozolewska, Pawel Krupa, Bartlomiej Zaborowski, Adam Liwo, Jooyoung Lee, Keehyoung Joo, Cezary Czaplewski
Use of Restraints from Consensus Fragments of Multiple Server Models To Enhance Protein-Structure Prediction Capability of the UNRES Force Field. J. Chem. Inf. Model. 56 (11) (2016)
In-Ho Lee, Young Jun Oh, Sunghyun Kim, Jooyoung Lee, K. J. Chang
Ab initio materials design using conformational space annealing and its application to searching for direct band gap silicon crystals. Comput. Phys. Commun. 203 (2016)
Pawel Krupa, Magdalena A. Mozolewska, Keehyoung Joo, Jooyoung Lee, Cezary Czaplewski, Adam Liwo
Prediction of Protein Structure by Template-Based Modeling Combined with the UNRES Force Field. J. Chem. Inf. Model. 55 (6) (2015)
Balachandran Manavalan, Kunihiro Kuwajima, InSuk Joung, Jooyoung Lee
Structure-based protein folding type classification and folding rate prediction. BIBM (2015)
Juyong Lee, Kiho Lee, InSuk Joung, Keehyoung Joo, Bernard R. Brooks, Jooyoung Lee
Sigma-RF: prediction of the variability of spatial restraints in template-based modeling by random forest. BMC Bioinform. 16 (2015)
Joo-Hyun Seo, Jihyang Park, Eun-Mi Kim, Juhan Kim, Keehyoung Joo, Jooyoung Lee, Byung-Gee Kim
Subgrouping Automata: Automatic sequence subgrouping using phylogenetic tree-based optimum subgrouping algorithm. Comput. Biol. Chem. 48 (2014)
Juyong Lee, Steven P. Gross, Jooyoung Lee
Extraction of hidden information by efficient community detection in networks CoRR (2012)
Juyong Lee, Steven P. Gross, Jooyoung Lee
Mod-CSA: Modularity optimization by conformational space annealing CoRR (2012)
Woong-Hee Shin, Lim Heo, Juyong Lee, Junsu Ko, Chaok Seok, Jooyoung Lee
LigDockCSA: Protein-ligand docking using conformational space annealing. J. Comput. Chem. 32 (15) (2011)
In-Ho Lee, Seung-Yeon Kim, Jooyoung Lee
Dynamic folding pathway models of the villin headpiece subdomain (HP-36) structure. J. Comput. Chem. 31 (1) (2010)
Jinwoo Lee, Keehyoung Joo, Seung-Yeon Kim, Jooyoung Lee
Re-examination of structure optimization of off-lattice protein AB models by conformational space annealing. J. Comput. Chem. 29 (14) (2008)
Hyeon S. Son, Seung-Yeon Kim, Jooyoung Lee, Kyu-Kwang Han
Application of the multiensemble sampling to the equilibrium folding of proteins. Bioinform. 22 (15) (2006)
Kyoungrim Lee, Cezary Czaplewski, Seung-Yeon Kim, Jooyoung Lee
An efficient molecular docking using conformational space annealing. J. Comput. Chem. 26 (1) (2005)
Harold A. Scheraga, Jaroslaw Pillardy, Adam Liwo, Jooyoung Lee, Cezary Czaplewski, Daniel R. Ripoll, William J. Wedemeyer, Yelena A. Arnautova
Evolution of physics-based methodology for exploring the conformational energy landscape of proteins. J. Comput. Chem. 23 (1) (2002)
Adam Liwo, Jaroslaw Pillardy, Cezary Czaplewski, Jooyoung Lee, Daniel R. Ripoll, Malgorzata Groth, Sylwia Rodziewicz-Motowidlo, Rajmund Kazmierkiewicz, Ryszard J. Wawak, Stanislaw Oldziej, Harold A. Scheraga
UNRES: a united-residue force field for energy-based prediction of protein structure - orgin and significance of multibody terms. RECOMB (2000)
Harold A. Scheraga, Jooyoung Lee, Jaroslaw Pillardy, Yuan-Jie Ye, Adam Liwo, Daniel R. Ripoll
Surmounting the Multiple-Minima Problem in Protein Folding. J. Glob. Optim. 15 (3) (1999)
Jooyoung Lee, Harold A. Scheraga, Shelly Rackovsky
New optimization method for conformational energy calculations on polypeptides: Conformational space annealing. J. Comput. Chem. 18 (9) (1997)