Subgrouping Automata: Automatic sequence subgrouping using phylogenetic tree-based optimum subgrouping algorithm.
Joo-Hyun SeoJihyang ParkEun-Mi KimJuhan KimKeehyoung JooJooyoung LeeByung-Gee KimPublished in: Comput. Biol. Chem. (2014)
Keyphrases
- learning algorithm
- preprocessing
- tree structure
- dynamic programming
- computationally efficient
- forward backward
- times faster
- experimental evaluation
- simulated annealing
- linear programming
- input data
- convergence rate
- theoretical analysis
- particle swarm optimization
- maximum likelihood
- np hard
- cost function
- expectation maximization
- probabilistic model
- optimization algorithm
- significant improvement
- computational complexity
- recognition algorithm
- finite state automata
- similarity measure