Daniel R. Ripoll

Publication Activity (10 Years)

Years Active: 1990-2021
Publications (10 Years): 1

Top Topics

Automatic Classification

Approximate Inference

Top Venues

PLoS Comput. Biol.

Publications

Daniel R. Ripoll, Sidhartha Chaudhury, Anders Wallqvist
Using the antibody-antigen binding interface to train image-based deep neural networks for antibody-epitope classification. PLoS Comput. Biol. 17 (3) (2021)
Daniel R. Ripoll, Ilja V. Khavrutskii, Sidhartha Chaudhury, Jin Liu, Robert A. Kuschner, Anders Wallqvist, Jaques Reifman
Quantitative Predictions of Binding Free Energy Changes in Drug-Resistant Influenza Neuraminidase. PLoS Comput. Biol. 8 (8) (2012)
Harold A. Scheraga, Jaroslaw Pillardy, Adam Liwo, Jooyoung Lee, Cezary Czaplewski, Daniel R. Ripoll, William J. Wedemeyer, Yelena A. Arnautova
Evolution of physics-based methodology for exploring the conformational energy landscape of proteins. J. Comput. Chem. 23 (1) (2002)
Adam Liwo, Jaroslaw Pillardy, Cezary Czaplewski, Jooyoung Lee, Daniel R. Ripoll, Malgorzata Groth, Sylwia Rodziewicz-Motowidlo, Rajmund Kazmierkiewicz, Ryszard J. Wawak, Stanislaw Oldziej, Harold A. Scheraga
UNRES: a united-residue force field for energy-based prediction of protein structure - orgin and significance of multibody terms. RECOMB (2000)
Harold A. Scheraga, Jooyoung Lee, Jaroslaw Pillardy, Yuan-Jie Ye, Adam Liwo, Daniel R. Ripoll
Surmounting the Multiple-Minima Problem in Protein Folding. J. Glob. Optim. 15 (3) (1999)
Timothy J. O'Donnell, Steven Hotovy, Marcia S. Pottle, Daniel R. Ripoll, Harold A. Scheraga
Implementation of ECEPP-Based Programs on the IBM SP2 and the SGI Power Challenge Computers. HPCN Europe (1996)
Daniel R. Ripoll, Marcia S. Pottle, Kenneth D. Gibson, Harold A. Scheraga, Adam Liwo
Implementation of the ECEPP Algorithm, the Monte Carlo Minimization Method, and the Electrostatically Driven Monte Carlo Method on the Kendall Square Research KSR1 Computer. J. Comput. Chem. 16 (9) (1995)
Daniel R. Ripoll, Stephen J. Thomas
A parallel Monte Carlo search algorithm for the conformational analysis of polypeptides. J. Supercomput. 6 (2) (1992)
Daniel R. Ripoll, Stephen J. Thomas
A parallel Monte Carlo search algorithm for the conformational analysis of proteins. SC (1990)