Jin Liu

Publication Activity (10 Years)

Years Active: 2009-2024
Publications (10 Years): 9

Top Topics

Protein Functional

Top Venues

J. Chem. Inf. Model.

PLoS Comput. Biol.

J. Comput. Chem.

Publications

Sita Sirisha Madugula, Pranav Pujar, Bharani Nammi, Shouyi Wang, Vindi M. Jayasinghe-Arachchige, Tyler Pham, Dominic Mashburn, Maria Artiles, Jin Liu
Identification of Family-Specific Features in Cas9 and Cas12 Proteins: A Machine Learning Approach Using Complete Protein Feature Spectrum. J. Chem. Inf. Model. 64 (12) (2024)
Yazdan Maghsoud, Vindi M. Jayasinghe-Arachchige, Pratibha Kumari, G. Andrés Cisneros, Jin Liu
Leveraging QM/MM and Molecular Dynamics Simulations to Decipher the Reaction Mechanism of the Cas9 HNH Domain to Investigate Off-Target Effects. J. Chem. Inf. Model. 63 (21) (2023)
Fangyun Bai, Kin Ming Puk, Jin Liu, Hongyu Zhou, Peng Tao, Wenyong Zhou, Shouyi Wang
Sparse group selection and analysis of function-related residue for protein-state recognition. J. Comput. Chem. 43 (20) (2022)
Hamed S. Hayatshahi, Robert R. Luedtke, Michelle Taylor, Peng-Jen Chen, Benjamin E. Blass, Jin Liu
Factors Governing Selectivity of Dopamine Receptor Binding Compounds for D2R and D3R Subtypes. J. Chem. Inf. Model. 61 (6) (2021)
Duen-Shian Wang, Hamed S. Hayatshahi, Vindi M. Jayasinghe-Arachchige, Jin Liu
Allosteric Modulation of Small Molecule Drugs on ACE2 Conformational Change upon Binding to SARS-CoV-2 Spike Protein. BIBM (2021)
Zhicheng Zuo, Jin Liu
Assessing the Performance of the Nonbonded Mg2+ Models in a Two-Metal-Dependent Ribonuclease. J. Chem. Inf. Model. 59 (1) (2019)
Hamed S. Hayatshahi, Emilio Ahuactzin, Peng Tao, Shouyi Wang, Jin Liu
Probing Protein Allostery as a Residue-Specific Concept via Residue Response Maps. J. Chem. Inf. Model. 59 (11) (2019)
Robert Kalescky, Hongyu Zhou, Jin Liu, Peng Tao
Rigid Residue Scan Simulations Systematically Reveal Residue Entropic Roles in Protein Allostery. PLoS Comput. Biol. 12 (4) (2016)
Jin Liu, Ruth Nussinov
Allostery: An Overview of Its History, Concepts, Methods, and Applications. PLoS Comput. Biol. 12 (6) (2016)
Daniel R. Ripoll, Ilja V. Khavrutskii, Sidhartha Chaudhury, Jin Liu, Robert A. Kuschner, Anders Wallqvist, Jaques Reifman
Quantitative Predictions of Binding Free Energy Changes in Drug-Resistant Influenza Neuraminidase. PLoS Comput. Biol. 8 (8) (2012)
Ruifeng Liu, Jin Liu, Gregory J. Tawa, Anders Wallqvist
2D SMARTCyp Reactivity-Based Site of Metabolism Prediction for Major Drug-Metabolizing Cytochrome P450 Enzymes. J. Chem. Inf. Model. 52 (6) (2012)
Jin Liu, Ruth Nussinov
The Mechanism of Ubiquitination in the Cullin-RING E3 Ligase Machinery: Conformational Control of Substrate Orientation. PLoS Comput. Biol. 5 (10) (2009)