Vindi M. Jayasinghe-Arachchige

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 6

Top Topics

Molecular Dynamics Simulations

Mass Spectrometry

Specific Features

Top Venues

J. Chem. Inf. Model.

J. Comput. Chem.

Publications

Sita Sirisha Madugula, Pranav Pujar, Bharani Nammi, Shouyi Wang, Vindi M. Jayasinghe-Arachchige, Tyler Pham, Dominic Mashburn, Maria Artiles, Jin Liu
Identification of Family-Specific Features in Cas9 and Cas12 Proteins: A Machine Learning Approach Using Complete Protein Feature Spectrum. J. Chem. Inf. Model. 64 (12) (2024)
Yazdan Maghsoud, Vindi M. Jayasinghe-Arachchige, Pratibha Kumari, G. Andrés Cisneros, Jin Liu
Leveraging QM/MM and Molecular Dynamics Simulations to Decipher the Reaction Mechanism of the Cas9 HNH Domain to Investigate Off-Target Effects. J. Chem. Inf. Model. 63 (21) (2023)
Leonardo F. Serafim, Vindi M. Jayasinghe-Arachchige, Lukun Wang, Rajeev Prabhakar
: Peptide and Phosphoester Hydrolyses. J. Chem. Inf. Model. 62 (10) (2022)
Duen-Shian Wang, Hamed S. Hayatshahi, Vindi M. Jayasinghe-Arachchige, Jin Liu
Allosteric Modulation of Small Molecule Drugs on ACE2 Conformational Change upon Binding to SARS-CoV-2 Spike Protein. BIBM (2021)
Qiaoyu Hu, Vindi M. Jayasinghe-Arachchige, Rajeev Prabhakar
Degradation of a Main Plastic Pollutant Polyethylene Terephthalate by Two Distinct Proteases (Neprilysin and Cutinase-like Enzyme). J. Chem. Inf. Model. 61 (2) (2021)
Vindi M. Jayasinghe-Arachchige, Qiaoyu Hu, Gaurav Sharma, Thomas J. Paul, Marcus Lundberg, David Quiñonero, Tatjana N. Parac-Vogt, Rajeev Prabhakar
Hydrolysis of chemically distinct sites of human serum albumin by polyoxometalate: A hybrid QM/MM (ONIOM) study. J. Comput. Chem. 40 (1) (2019)