Jimin Pei

Publication Activity (10 Years)

Years Active: 2001-2023
Publications (10 Years): 6

Top Topics

Solvent Accessibility

Secondary Structure

Top Venues

PLoS Comput. Biol.

Database J. Biol. Databases Curation

Publications

Jimin Pei, Qian Cong
AFTM: a database of transmembrane regions in the human proteome predicted by AlphaFold. Database J. Biol. Databases Curation 2023 (2023)
Kirill E. Medvedev, Jimin Pei, Nick V. Grishin
DisEnrich: database of enriched regions in human dark proteome. Bioinform. 38 (7) (2022)
Jimin Pei, Jing Zhang, Qian Cong
Human mitochondrial protein complexes revealed by large-scale coevolution analysis and deep learning-based structure modeling. Bioinform. 38 (18) (2022)
Jimin Pei, Lisa N. Kinch, Zbyszek Otwinowski, Nick V. Grishin
Mutation severity spectrum of rare alleles in the human genome is predictive of disease type. PLoS Comput. Biol. 16 (5) (2020)
Yoonji Lee, Jordan M. Baumhardt, Jimin Pei, Yuh Min Chook, Nick V. Grishin
pCRM1exportome: database of predicted CRM1-dependent Nuclear Export Signal (NES) motifs in cancer-related genes. Bioinform. 36 (3) (2020)
Yuxing Liao, R. Dustin Schaeffer, Jimin Pei, Nick V. Grishin
A sequence family database built on ECOD structural domains. Bioinform. 34 (17) (2018)
Jing Tong, Jimin Pei, Nick V. Grishin
SFESA: a web server for pairwise alignment refinement by secondary structure shifts. BMC Bioinform. 16 (2015)
Darui Xu, Kara Marquis, Jimin Pei, Szu-Chin Fu, Tolga Cagatay, Nick V. Grishin, Yuh Min Chook
LocNES: a computational tool for locating classical NESs in CRM1 cargo proteins. Bioinform. 31 (9) (2015)
Hua Cheng, R. Dustin Schaeffer, Yuxing Liao, Lisa N. Kinch, Jimin Pei, Shuoyong Shi, Bong-Hyun Kim, Nick V. Grishin
ECOD: An Evolutionary Classification of Protein Domains. PLoS Comput. Biol. 10 (12) (2014)
Ivan K. Huang, Jimin Pei, Nick V. Grishin
Defining and predicting structurally conserved regions in protein superfamilies. Bioinform. 29 (2) (2013)
Qian Cong, Lisa N. Kinch, Jimin Pei, Shuoyong Shi, Vyacheslav N. Grishin, Wenlin Li, Nick V. Grishin
An automatic method for CASP9 free modeling structure prediction assessment. Bioinform. 27 (24) (2011)
Shuoyong Shi, Jimin Pei, Ruslan Sadreyev, Lisa N. Kinch, Indraneel Majumdar, Jing Tong, Hua Cheng, Bong-Hyun Kim, Nick V. Grishin
Analysis of CASP8 targets, predictions and assessment methods. Database J. Biol. Databases Curation 2009 (2009)
Jimin Pei, Ming Tang, Nick V. Grishin
PROMALS3D web server for accurate multiple protein sequence and structure alignments. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Jimin Pei, Nick V. Grishin
PROMALS: towards accurate multiple sequence alignments of distantly related proteins. Bioinform. 23 (7) (2007)
Jimin Pei, Bong-Hyun Kim, Ming Tang, Nick V. Grishin
PROMALS web server for accurate multiple protein sequence alignments. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Jimin Pei, Wei Cai, Lisa N. Kinch, Nick V. Grishin
Prediction of functional specificity determinants from protein sequences using log-likelihood ratios. Bioinform. 22 (2) (2006)
Jimin Pei, Ruslan Sadreyev, Nick V. Grishin
PCMA: fast and accurate multiple sequence alignment based on profile consistency. Bioinform. 19 (3) (2003)
Jimin Pei, Nick V. Grishin
AL2CO: calculation of positional conservation in a protein sequence alignment. Bioinform. 17 (8) (2001)