SFESA: a web server for pairwise alignment refinement by secondary structure shifts.
Jing TongJimin PeiNick V. GrishinPublished in: BMC Bioinform. (2015)
Keyphrases
- web server
- secondary structure
- pairwise
- multiple sequence alignment
- rna sequences
- sequence alignment
- multiple alignment
- protein sequences
- website
- psi blast
- global alignment
- amino acids
- predicting protein
- computational methods
- rna secondary structures
- protein structure
- statistical significance
- database server
- web search engines
- rna secondary structure prediction
- protein secondary structure
- web pages
- solvent accessibility
- amino acid sequences
- protein folding
- structural features
- markov random field
- end users
- similarity measure
- secondary structure of proteins
- mobile agents
- tertiary structure
- dynamic content
- computational biology
- machine learning
- graph matching