Guoli Ji

Publication Activity (10 Years)

Years Active: 2007-2024
Publications (10 Years): 32

Top Topics

Fault Diagnosis

Reference Genome

Top Venues

Briefings Bioinform.

Knowl. Based Syst.

Publications

Wenjie You, Zijiang Yang, Guoli Ji
PLS-based gene subset augmentation and tumor-specific gene identification. Comput. Biol. Medicine 174 (2024)
Guoli Ji, Qi Tang, Sheng Zhu, Junyi Zhu, Pengchao Ye, Shuting Xia, Xiaohui Wu
stAPAminer: Mining Spatial Patterns of Alternative Polyadenylation for Spatially Resolved Transcriptomic Studies. Genom. Proteom. Bioinform. 21 (3) (2023)
Junjie Zhang, Guoli Ji, Xilin Gao, Jinting Guan
Single-nucleus gene and gene set expression-based similarity network fusion identifies autism molecular subtypes. BMC Bioinform. 24 (1) (2023)
Qingyang Yin, Yang Wang, Jinting Guan, Guoli Ji
scIAE: an integrative autoencoder-based ensemble classification framework for single-cell RNA-seq data. Briefings Bioinform. 23 (1) (2022)
Sheng Zhu, Qiwei Lian, Wenbin Ye, Wei Qin, Zhe Wu, Guoli Ji, Xiaohui Wu
scAPAdb: a comprehensive database of alternative polyadenylation at single-cell resolution. Nucleic Acids Res. 50 (D1) (2022)
Xiaohui Wu, Tao Liu, Congting Ye, Wenbin Ye, Guoli Ji
scAPAtrap: identification and quantification of alternative polyadenylation sites from single-cell RNA-seq data. Briefings Bioinform. 22 (4) (2021)
Mengfei Liu, Guoli Ji
Whole Genome Analysis of Polyadenylation Sites in Long Non-coding RNAs in Oryza Sativa. ICBBT (2021)
Wenbin Ye, Tao Liu, Hongjuan Fu, Congting Ye, Guoli Ji, Xiaohui Wu
movAPA: modeling and visualization of dynamics of alternative polyadenylation across biological samples. Bioinform. 37 (16) (2021)
Huoyou Li, Xuesong Xiao, Xiaohui Wu, Lishan Ye, Guoli Ji
scLINE: A multi-network integration framework based on network embedding for representation of single-cell RNA-seq data. J. Biomed. Informatics 122 (2021)
Congting Ye, Danhui Zhao, Wenbin Ye, Xiaohui Wu, Guoli Ji, Qingshun Quinn Li, Juncheng Lin
QuantifyPoly(A): reshaping alternative polyadenylation landscapes of eukaryotes with weighted density peak clustering. Briefings Bioinform. 22 (6) (2021)
Congting Ye, Qian Zhou, Xiaohui Wu, Chen Yu, Guoli Ji, Daniel R. Saban, Qingshun Quinn Li
scDAPA: detection and visualization of dynamic alternative polyadenylation from single cell RNA-seq data. Bioinform. 36 (4) (2020)
Xin Wei, Yibo Zhuang, Xiaohui Wu, Guoli Ji
SCNMLRR: Single Cell Clustering Based on Low-rank Non-negative Matrix Factorization. ICBBS (2020)
Moliang Chen, Guoli Ji, Hongjuan Fu, Qianmin Lin, Congting Ye, Wenbin Ye, Yaru Su, Xiaohui Wu
A survey on identification and quantification of alternative polyadenylation sites from RNA-seq data. Briefings Bioinform. 21 (4) (2020)
Hongjuan Fu, Yibo Zhuang, Xiaohui Wu, Guoli Ji
A Pipeline to Identify Novel 3' UTRs and Widespread Intergenic Transcription by Combination of Polyadenylation Sites and RNA-seq Data. ICBBS (2020)
Pengchao Ye, Wenbin Ye, Congting Ye, Shuchao Li, Lishan Ye, Guoli Ji, Xiaohui Wu
scHinter: imputing dropout events for single-cell RNA-seq data with limited sample size. Bioinform. 36 (3) (2020)
Yang Wang, Yiping Lin, Guoli Ji, Jinting Guan
Gene Screening for Autism Based on Cell-type-specific Predictive Models. BIBM (2020)
Mingshun Yuan, Zijiang Yang, Guoli Ji
Partial maximum correlation information: A new feature selection method for microarray data classification. Neurocomputing 323 (2019)
Wenjie You, Zijiang Yang, Guangbao Guo, Xiu-Feng Wan, Guoli Ji
Prediction of DNA-binding proteins by interaction fusion feature representation and selective ensemble. Knowl. Based Syst. 163 (2019)
Yiping Lin, Shuchao Li, Guoli Ji, Jinting Guan
Human brain cell type-specific gene co-expression associated with autism spectrum disorder. BIBM (2019)
Wenbing Zhu, Zijiang Yang, Xuesong Xiao, Yuanhaowei Ji, Shuchao Li, Xue Yan, Guoli Ji
An Improved Bayesian Integrated ICA Approach for Control Loop Diagnosis with Small Sample Size. ICCAD (2019)
Guoli Ji, Wenbin Ye, Yaru Su, Moliang Chen, Guangzao Huang, Xiaohui Wu
AStrap: identification of alternative splicing from transcript sequences without a reference genome. Bioinform. 35 (15) (2019)
Yimin Zheng, Guoli Ji, Zhuo-Yun Nie, Jiangyin Huang
Research on a reduced order closed-loop identification algorithms based on AIC for process with time delay. Clust. Comput. 22 (6) (2019)
Congting Ye, Yuqi Long, Guoli Ji, Qingshun Quinn Li, Xiaohui Wu
APAtrap: identification and quantification of alternative polyadenylation sites from RNA-seq data. Bioinform. 34 (11) (2018)
Guoli Ji, Moliang Chen, Wenbin Ye, Sheng Zhu, Congting Ye, Yaru Su, Haonan Peng, Xiaohui Wu
TSAPA: identification of tissue-specific alternative polyadenylation sites in plants. Bioinform. 34 (12) (2018)
Jinting Guan, Moliang Chen, Congting Ye, James J. Cai, Guoli Ji
AEGS: identifying aberrantly expressed gene sets for differential variability analysis. Bioinform. 34 (5) (2018)
Mingshun Yuan, Zijiang Yang, Guangzao Huang, Guoli Ji
A novel feature selection method to predict protein structural class. Comput. Biol. Chem. 76 (2018)
Mingshun Yuan, Zijiang Yang, Guangzao Huang, Guoli Ji
Feature selection by maximizing correlation information for integrated high-dimensional protein data. Pattern Recognit. Lett. 92 (2017)
Guoli Ji, Pengchao Ye, Yijian Shi, Leiming Yuan, Xiaojing Chen, Mingshun Yuan, Dehua Zhu, Xi Chen, Xinyu Hu, Jing Jiang
. Sensors 17 (11) (2017)
Guangzao Huang, Zijiang Yang, Xiaojing Chen, Guoli Ji
An innovative one-class least squares support vector machine model based on continuous cognition. Knowl. Based Syst. 123 (2017)
Guoli Ji, Qianmin Lin, Yuqi Long, Congting Ye, Wenbin Ye, Xiaohui Wu
PAcluster: Clustering polyadenylation site data using canonical correlation analysis. J. Bioinform. Comput. Biol. 15 (5) (2017)
Jinting Guan, Meishuang Tang, Guangzao Huang, Wenbing Zhu, Sun Zhou, Guoli Ji
A new small-world network model for instant messaging chat network. SoSE (2016)
Wenbing Zhu, Zijiang Yang, Meishuang Tang, Sun Zhou, Bin Yao, Guoli Ji
Integrating principal component analysis and optimal histogram estimation for Bayesian control loop diagnosis. AIM (2016)
Yaozong Wang, Xiaorong Hu, Sun Zhou, Guoli Ji
Oscillation Source Detection for Large-Scale Chemical Process with Interpretative Structural Model. ITITS (2) (2015)
Guoli Ji, Lei Li, Qingshun Quinn Li, Xiangdong Wu, Jingyi Fu, Gong Chen, Xiaohui Wu
PASPA: a web server for mRNA poly(A) site predictions in plants and algae. Bioinform. 31 (10) (2015)
Kangkang Zhang, Ruben Gonzalez, Biao Huang, Guoli Ji
Expectation-Maximization Approach to Fault Diagnosis With Missing Data. IEEE Trans. Ind. Electron. 62 (2) (2015)
Wenbing Zhu, Zixuan Li, Sun Zhou, Guoli Ji
Bayesian Fault Diagnosis Using Principal Component Analysis Approach with Continuous Evidence. ITITS (1) (2015)
Jinting Guan, Jingyi Fu, Mingcheng Wu, Longteng Chen, Guoli Ji, Qingshun Quinn Li, Xiaohui Wu
VAAPA: A web platform for visualization and analysis of alternative polyadenylation. Comput. Biol. Medicine 57 (2015)
Guoli Ji, Jinting Guan, Yong Zeng, Qingshun Quinn Li, Xiaohui Wu
Genome-wide identification and predictive modeling of polyadenylation sites in eukaryotes. Briefings Bioinform. 16 (2) (2015)
Sun Zhou, Zhongyuan Cai, Guoli Ji
Bayesian Approach to Fault Diagnosis with Ambiguous Historical Modes. ITITS (2) (2015)
Yunlong Liu, Zijiang Yang, Guoli Ji
Solving partially observable problems with inaccurate PSR models. Inf. Sci. 283 (2014)
Wenjie You, Zijiang Yang, Guoli Ji
PLS-based recursive feature elimination for high-dimensional small sample. Knowl. Based Syst. 55 (2014)
Wenjie You, Zijiang Yang, Guoli Ji
Feature selection for high-dimensional multi-category data using PLS-based local recursive feature elimination. Expert Syst. Appl. 41 (4) (2014)
Guoli Ji, Jiangyin Huang, Kangkang Zhang, Yucai Zhu, Wei Lin, Tianxiao Ji, Sun Zhou, Bin Yao
Identification and predictive control for a circulation fluidized bed boiler. Knowl. Based Syst. 45 (2013)
Yunlong Gao, Guoli Ji, Zijiang Yang, Jinyan Pan
A Dynamic AdaBoost Algorithm With Adaptive Changes of Loss Function. IEEE Trans. Syst. Man Cybern. Part C 42 (6) (2012)
Pei Li, Guoli Ji, Min Dong, Emily Schmidt, Douglas Lenox, Liangliang Chen, Qi Liu, Lin Liu, Jie Zhang, Chun Liang
CBrowse: a SAM/BAM-based contig browser for transcriptome assembly visualization and analysis. Bioinform. 28 (18) (2012)
Guoli Ji, Zhe Xiang, Xiaohui Wu, Shuiyuan Lin, Meishuang Tang, Junfeng Yao
High-throughput antibody sequence alignment based on GPU computing. SAC (2012)
Yunlong Gao, Jinyan Pan, Guoli Ji, Zijiang Yang
A novel two-level nearest neighbor classification algorithm using an adaptive distance metric. Knowl. Based Syst. 26 (2012)
Xiaohui Wu, Meishuang Tang, Junfeng Yao, Shuiyuan Lin, Zhe Xiang, Guoli Ji
PATMAP: Polyadenylation Site Identification from Next-Generation Sequencing Data. HAIS (1) (2012)
Guoli Ji, Huanghui Zhang, Xiaohui Wu, Meishuang Tang
Identification of plant messenger RNA polyadenylation sites using length-variable second order Markov model. SMC (2011)
Guoli Ji, Zijiang Yang, Wenjie You
PLS-Based Gene Selection and Identification of Tumor-Specific Genes. IEEE Trans. Syst. Man Cybern. Part C 41 (6) (2011)
Zijiang Yang, Wenjie You, Guoli Ji
Using partial least squares and support vector machines for bankruptcy prediction. Expert Syst. Appl. 38 (7) (2011)
Sun Zhou, Guoli Ji, Zijiang Yang, Wei Chen
Hybrid intelligent control scheme of a polymerization kettle for ACR production. Knowl. Based Syst. 24 (7) (2011)
Junfeng Yao, Chengpeng Wu, Xiaobiao Xie, Kai Qian, Guoli Ji, Prabir Bhattacharya
A new method of information decision-making based on D-S evidence theory. SMC (2010)
Yunlong Liu, Guoli Ji, Zijiang Yang
Using Learned PSR Model for Planning under Uncertainty. Canadian Conference on AI (2010)
Sun Zhou, Guoli Ji
Modeling and fuzzy controller design for ACR polymerizing-kettles. ICCA (2010)
Guoli Ji, Xiaohui Wu, Qingshun Quinn Li, Jianti Zheng
. ISNN (1) (2010)
Wenjie You, Shanshan Wu, Guoli Ji
The Application of an Improved Particle Swarm Optimization (PSO) Algorithm in Pairwise Sequence Alignment. CIS (2) (2009)
Guoli Ji, Congting Ye, Zijiang Yang, Zhenya Guo
A Novel Method for Progressive Multiple Sequence Alignment Based on Lempel-Ziv. ICONIP (1) (2009)
Guoli Ji, Xiaohui Wu, Denghui Xing, Qingshun Quinn Li
PROBER: Segmentation and Differential Analysis Tool for Tiling Microarray Data. BMEI (2009)
Chun Liang, Lin Liu, Guoli Ji
WebGMAP: a web service for mapping and aligning cDNA sequences to genomes. Nucleic Acids Res. 37 (Web-Server-Issue) (2009)
Guoli Ji, Jianti Zheng, Yingjia Shen, Xiaohui Wu, Ronghan Jiang, Yun Lin, Johnny C. Loke, Kimberly M. Davis, Greg J. Reese, Qingshun Quinn Li
Predictive modeling of plant messenger RNA polyadenylation sites. BMC Bioinform. 8 (2007)
Chun Liang, Gang Wang, Lin Liu, Guoli Ji, Yuansheng Liu, Jinqiao Chen, Jason S. Webb, Greg J. Reese, Jeffrey F. D. Dean
WebTraceMiner: a web service for processing and mining EST sequence trace files. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)