Congting Ye

Publication Activity (10 Years)

Years Active: 2009-2023
Publications (10 Years): 11

Top Topics

Data Acquisition

Experimental Conditions

Top Venues

Briefings Bioinform.

Genom. Proteom. Bioinform.

J. Bioinform. Comput. Biol.

Publications

Wenbin Ye, Qiwei Lian, Congting Ye, Xiaohui Wu
A Survey on Methods for Predicting Polyadenylation Sites from DNA Sequences, Bulk RNA-seq, and Single-cell RNA-seq. Genom. Proteom. Bioinform. 21 (1) (2023)
Xiaohui Wu, Tao Liu, Congting Ye, Wenbin Ye, Guoli Ji
scAPAtrap: identification and quantification of alternative polyadenylation sites from single-cell RNA-seq data. Briefings Bioinform. 22 (4) (2021)
Wenbin Ye, Tao Liu, Hongjuan Fu, Congting Ye, Guoli Ji, Xiaohui Wu
movAPA: modeling and visualization of dynamics of alternative polyadenylation across biological samples. Bioinform. 37 (16) (2021)
Congting Ye, Danhui Zhao, Wenbin Ye, Xiaohui Wu, Guoli Ji, Qingshun Quinn Li, Juncheng Lin
QuantifyPoly(A): reshaping alternative polyadenylation landscapes of eukaryotes with weighted density peak clustering. Briefings Bioinform. 22 (6) (2021)
Congting Ye, Qian Zhou, Xiaohui Wu, Chen Yu, Guoli Ji, Daniel R. Saban, Qingshun Quinn Li
scDAPA: detection and visualization of dynamic alternative polyadenylation from single cell RNA-seq data. Bioinform. 36 (4) (2020)
Moliang Chen, Guoli Ji, Hongjuan Fu, Qianmin Lin, Congting Ye, Wenbin Ye, Yaru Su, Xiaohui Wu
A survey on identification and quantification of alternative polyadenylation sites from RNA-seq data. Briefings Bioinform. 21 (4) (2020)
Pengchao Ye, Wenbin Ye, Congting Ye, Shuchao Li, Lishan Ye, Guoli Ji, Xiaohui Wu
scHinter: imputing dropout events for single-cell RNA-seq data with limited sample size. Bioinform. 36 (3) (2020)
Congting Ye, Yuqi Long, Guoli Ji, Qingshun Quinn Li, Xiaohui Wu
APAtrap: identification and quantification of alternative polyadenylation sites from RNA-seq data. Bioinform. 34 (11) (2018)
Guoli Ji, Moliang Chen, Wenbin Ye, Sheng Zhu, Congting Ye, Yaru Su, Haonan Peng, Xiaohui Wu
TSAPA: identification of tissue-specific alternative polyadenylation sites in plants. Bioinform. 34 (12) (2018)
Jinting Guan, Moliang Chen, Congting Ye, James J. Cai, Guoli Ji
AEGS: identifying aberrantly expressed gene sets for differential variability analysis. Bioinform. 34 (5) (2018)
Guoli Ji, Qianmin Lin, Yuqi Long, Congting Ye, Wenbin Ye, Xiaohui Wu
PAcluster: Clustering polyadenylation site data using canonical correlation analysis. J. Bioinform. Comput. Biol. 15 (5) (2017)
Guoli Ji, Congting Ye, Zijiang Yang, Zhenya Guo
A Novel Method for Progressive Multiple Sequence Alignment Based on Lempel-Ziv. ICONIP (1) (2009)