François Képès

Publication Activity (10 Years)

Years Active: 2003-2016
Publications (10 Years): 2

Top Topics

State Variables

Stochastic Simulation

Top Venues

Nucleic Acids Res.

Publications

Costas Bouyioukos, Mohamed Elati, François Képès
Analysis tools for the interplay between genome layout and regulation. BMC Bioinform. 17 (S-5) (2016)
Costas Bouyioukos, François Bucchini, Mohamed Elati, François Képès
GREAT: a web portal for Genome Regulatory Architecture Tools. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Jonathan Passerat-Palmbach, Jonathan Caux, Yannick Le Pennec, Romain Reuillon, Ivan Junier, François Képès, David R. C. Hill
Parallel stepwise stochastic simulation: harnessing GPUs to explore possible futures states of a chromosome folding model thanks to the possible futures algorithm (PFA). SIGSIM-PADS (2013)
Markus Kirkilionis, François Képès
Introduction to special issue ECCS'09 in Theory in Biosciences. Theory Biosci. 130 (3) (2011)
Mohamed Elati, Rim Fekih, Rémy Nicolle, Ivan Junier, Joan Hérisson, François Képès
Boosting Binding Sites Prediction Using Gene's Positions. WABI (2011)
Vic Norris, Abdallah Zemirline, Patrick Amar, Jean Nicolas Audinot, Pascal Ballet, Eshel Ben-Jacob, Gilles Bernot, Guillaume Beslon, Armelle Cabin, Eric Fanchon, Jean-Louis Giavitto, Nicolas Glade, Patrick Greussay, Yohann Grondin, James A. Foster, Guillaume Hutzler, Jürgen Jost, François Képès, Olivier Michel, Franck Molina, Jacqueline Signorini, Pasquale Stano, Alain R. Thierry
Computing with bacterial constituents, cells and populations: from bioputing to bactoputing. Theory Biosci. 130 (3) (2011)
Ivan Junier, Joan Hérisson, François Képès
Periodic pattern detection in sparse boolean sequences. Algorithms Mol. Biol. 5 (2010)
Pierre-Yves Bourguignon, Areejit Samal, François Képès, Jürgen Jost, Olivier C. Martin
Challenges in experimental data integration within genome-scale metabolic models. Algorithms Mol. Biol. 5 (2010)
Ivan Junier, Olivier C. Martin, François Képès
Spatial and Topological Organization of DNA Chains Induced by Gene Co-localization. PLoS Comput. Biol. 6 (2) (2010)
Matthieu Manceny, Marc Aiguier, Pascale Le Gall, Joan Hérisson, Ivan Junier, François Képès
Spatial Information and Boolean Genetic Regulatory Networks. BICoB (2009)
Mathieu Poudret, Agnès Arnould, Jean-Paul Comet, Pascale Le Gall, Philippe Meseure, François Képès
Topology-based abstraction of complex biological systems: application to the Golgi apparatus. Theory Biosci. 127 (2) (2008)
Anastasia Yartseva, Raymond R. Devillers, Hanna Klaudel, François Képès
From MIN model to ordinary differential equations. J. Integr. Bioinform. 4 (3) (2007)
Anastasia Yartseva, Hanna Klaudel, Raymond R. Devillers, François Képès
Incremental and unifying modelling formalism for biological interaction networks. BMC Bioinform. 8 (2007)
Gilles Bernot, François Képès
Chronique : Le programme d'épigénomique. Tech. Sci. Informatiques 26 (1-2) (2007)
Pierre-Yves Bourguignon, Vincent Danos, François Képès, Serge Smidtas, Vincent Schächter
Property-Driven Statistics of Biological Networks. Trans. Comp. Sys. Biology 6 (2006)
Oriane Matte-Tailliez, Joan Hérisson, Nicolas Férey, Olivier Magneau, Pierre-Emmanuel Gros, François Képès, Rachid Gherbi
Yeast Naked DNA Spatial Organization Predisposes to Transcriptional Regulation. ICCSA (1) (2006)
Nicolas Omont, François Képès
Transcription/replication collisions cause bacterial transcription units to be longer on the leading strand of replication. Bioinform. 20 (16) (2004)
Alessandra Carbone, Andrei Yu. Zinovyev, François Képès
Codon adaptation index as a measure of dominating codon bias. Bioinform. 19 (16) (2003)