Alan Veliz-Cuba

Publication Activity (10 Years)

Years Active: 2010-2024
Publications (10 Years): 12

Top Topics

Stochastic Models

Changing Environment

Experimental Designs

Top Venues

Discret. Event Dyn. Syst.

J. Comput. Neurosci.

Publications

Alan Veliz-Cuba, Vanessa Newsome-Slade, Elena S. Dimitrova
A Unified Approach to Reverse Engineering and Data Selection for Unique Network Identification. SIAM J. Appl. Dyn. Syst. 23 (1) (2024)
Elena S. Dimitrova, Cameron H. Fredrickson, Nicholas A. Rondoni, Brandilyn Stigler, Alan Veliz-Cuba
Algebraic Experimental Design: Theory and Computation. SIAM J. Appl. Algebra Geom. 8 (2) (2024)
David Murrugarra, Alan Veliz-Cuba
An information theoretic approach for the inference of Boolean networks and functions from data: BoCSE. Patterns 3 (11) (2022)
Alan Veliz-Cuba, Reinhard C. Laubenbacher
Dynamics of semilattice networks with strongly connected dependency graph. Autom. 99 (2019)
Mehdi Sadeghpour, Alan Veliz-Cuba, Gábor Orosz, Kresimir Josic, Matthew R. Bennett
Bistability and oscillations in co-repressive synthetic microbial consortia. Quant. Biol. 5 (1) (2017)
Adrian E. Radillo, Alan Veliz-Cuba, Kresimir Josic, Zachary P. Kilpatrick
Evidence Accumulation and Change Rate Inference in Dynamic Environments. Neural Comput. 29 (6) (2017)
David Murrugarra, Alan Veliz-Cuba, Boris Aguilar, Reinhard C. Laubenbacher
Identification of control targets in Boolean molecular network models via computational algebra. BMC Syst. Biol. 10 (2016)
Alan Veliz-Cuba, Lauren Geiser
The Number of Fixed Points of AND-OR Networks with Chain Topology. CoRR (2016)
Alan Veliz-Cuba, Zachary P. Kilpatrick, Kresimir Josic
Stochastic Models of Evidence Accumulation in Changing Environments. SIAM Rev. 58 (2) (2016)
Alan Veliz-Cuba, Andrew J. Hirning, Adam A. Atanas, Faiza Hussain, Flavia Vancia, Kresimir Josic, Matthew R. Bennett
Sources of Variability in a Synthetic Gene Oscillator. PLoS Comput. Biol. 11 (12) (2015)
Alan Veliz-Cuba, Boris Aguilar, Reinhard C. Laubenbacher
Dimension Reduction of Large Sparse AND-NOT Network Models. Electron. Notes Theor. Comput. Sci. 316 (2015)
Alan Veliz-Cuba, Harel Z. Shouval, Kresimir Josic, Zachary P. Kilpatrick
Networks that learn the precise timing of event sequences. J. Comput. Neurosci. 39 (3) (2015)
Alan Veliz-Cuba, Boris Aguilar, Franziska Hinkelmann, Reinhard C. Laubenbacher
Steady state analysis of Boolean molecular network models via model reduction and computational algebra. BMC Bioinform. 15 (2014)
Alan Veliz-Cuba, David Murrugarra, Reinhard C. Laubenbacher
Structure and dynamics of acyclic networks. Discret. Event Dyn. Syst. 24 (4) (2014)
Alan Veliz-Cuba, Reinhard C. Laubenbacher, Boris Aguilar
Dimension Reduction of Large AND-NOT Network Models. CoRR (2013)
David Murrugarra, Alan Veliz-Cuba, Boris Aguilar, Seda Arat, Reinhard C. Laubenbacher
Modeling stochasticity and variability in gene regulatory networks. EURASIP J. Bioinform. Syst. Biol. 2012 (2012)
Alan Veliz-Cuba
An Algebraic Approach to Reverse Engineering Finite Dynamical Systems Arising from Biology. SIAM J. Appl. Dyn. Syst. 11 (1) (2012)
Alan Veliz-Cuba, Brandilyn Stigler
Operon. J. Comput. Biol. 18 (6) (2011)
Franziska Hinkelmann, Madison Brandon, Bonny Guang, Rustin McNeill, Grigoriy Blekherman, Alan Veliz-Cuba, Reinhard C. Laubenbacher
ADAM: Analysis of Discrete Models of Biological Systems Using Computer Algebra. BMC Bioinform. 12 (2011)
Alan Veliz-Cuba, Joseph Arthur, Laura Hochstetler, Victoria Klomps, Erikka Korpi
On the relationship of steady states of continuous and discrete models CoRR (2011)
Alan Veliz-Cuba, Abdul Salam Jarrah, Reinhard C. Laubenbacher
Polynomial algebra of discrete models in systems biology. Bioinform. 26 (13) (2010)