Kresimir Josic

Publication Activity (10 Years)

Years Active: 2000-2023
Publications (10 Years): 18

Top Topics

Stochastic Models

Event Sequences

Social Networks

Bayesian Models

Top Venues

PLoS Comput. Biol.

J. Comput. Neurosci.

Publications

Hyukpyo Hong, Mark Jayson Cortez, Yu-Yu Cheng, Hang Joon Kim, Boseung Choi, Kresimir Josic, Jae Kyoung Kim
Inferring delays in partially observed gene regulation processes. Bioinform. 39 (11) (2023)
Mark Jayson Cortez, Alan Eric Akil, Kresimir Josic, Alexander J. Stewart
Incorporating Computational Challenges into a Multidisciplinary Course on Stochastic Processes. SIAM Rev. 65 (4) (2023)
Tahra L. Eissa, Joshua I. Gold, Kresimir Josic, Zachary P. Kilpatrick
Suboptimal human inference can invert the bias-variance trade-off for decisions with asymmetric evidence. PLoS Comput. Biol. 18 (7) (2022)
Mark Jayson Cortez, Hyukpyo Hong, Boseung Choi, Jae Kyoung Kim, Kresimir Josic
Hierarchical Bayesian models of transcriptional and translational regulation processes with delays. Bioinform. 38 (1) (2021)
James J. Winkle, Bhargav R. Karamched, Matthew R. Bennett, William Ott, Kresimir Josic
Emergent spatiotemporal population dynamics with cell-length control of synthetic microbial consortia. PLoS Comput. Biol. 17 (9) (2021)
Sorena Sarmadi, James J. Winkle, Razan N. Alnahhas, Matthew R. Bennett, Kresimir Josic, Andreas Mang, Robert Azencott
Stochastic Neural Networks for Automatic Cell Tracking in Microscopy Image Sequences of Bacterial Colonies. CoRR (2021)
Alan Eric Akil, Robert Rosenbaum, Kresimir Josic
Balanced networks under spike-time dependent plasticity. PLoS Comput. Biol. 17 (5) (2021)
Bhargav R. Karamched, Simon Stolarczyk, Zachary P. Kilpatrick, Kresimir Josic
Bayesian Evidence Accumulation on Social Networks. SIAM J. Appl. Dyn. Syst. 19 (3) (2020)
Yunjiao Wang, Zachary P. Kilpatrick, Kresimir Josic
A hierarchical model of perceptual multistability involving interocular grouping. J. Comput. Neurosci. 48 (2) (2020)
Boseung Choi, Yu-Yu Cheng, Selahattin Cinar, William Ott, Matthew R. Bennett, Kresimir Josic, Jae Kyoung Kim
Bayesian inference of distributed time delay in transcriptional and translational regulation. Bioinform. 36 (2) (2020)
Nicholas W. Barendregt, Kresimir Josic, Zachary P. Kilpatrick
Analyzing dynamic decision-making models using Chapman-Kolmogorov equations. J. Comput. Neurosci. 47 (2-3) (2019)
Bhargav R. Karamched, Simon Stolarczyk, Zachary P. Kilpatrick, Kresimir Josic
Optimal Evidence Accumulation on Social Networks. CoRR (2018)
Simon Stolarczyk, Manisha Bhardwaj, Kevin E. Bassler, Wei Ji Ma, Kresimir Josic
Loss of information in feedforward social networks. J. Complex Networks 6 (3) (2018)
Mehdi Sadeghpour, Alan Veliz-Cuba, Gábor Orosz, Kresimir Josic, Matthew R. Bennett
Bistability and oscillations in co-repressive synthetic microbial consortia. Quant. Biol. 5 (1) (2017)
Adrian E. Radillo, Alan Veliz-Cuba, Kresimir Josic, Zachary P. Kilpatrick
Evidence Accumulation and Change Rate Inference in Dynamic Environments. Neural Comput. 29 (6) (2017)
Gabriel Koch Ocker, Kresimir Josic, Eric Shea-Brown, Michael A. Buice
Linking structure and activity in nonlinear spiking networks. PLoS Comput. Biol. 13 (6) (2017)
Alan Veliz-Cuba, Zachary P. Kilpatrick, Kresimir Josic
Stochastic Models of Evidence Accumulation in Changing Environments. SIAM Rev. 58 (2) (2016)
Simon Stolarczyk, Manisha Bhardwaj, Kevin E. Bassler, Wei Ji Ma, Kresimir Josic
Loss of information in feedforward social networks. CoRR (2016)
Alan Veliz-Cuba, Andrew J. Hirning, Adam A. Atanas, Faiza Hussain, Flavia Vancia, Kresimir Josic, Matthew R. Bennett
Sources of Variability in a Synthetic Gene Oscillator. PLoS Comput. Biol. 11 (12) (2015)
Manisha Bhardwaj, Samuel Carroll, Wei Ji Ma, Kresimir Josic
Visual Decisions in the Presence of Measurement and Stimulus Correlations. Neural Comput. 27 (11) (2015)
Dimitri Yatsenko, Kresimir Josic, Alexander S. Ecker, Emmanouil Froudarakis, R. James Cotton, Andreas S. Tolias
Improved Estimation and Interpretation of Correlations in Neural Circuits. PLoS Comput. Biol. 11 (3) (2015)
Truong D. Nguyen-Huu, Chinmaya Gupta, Bo Ma, William Ott, Kresimir Josic, Matthew R. Bennett
Timing and Variability of Galactose Metabolic Gene Activation Depend on the Rate of Environmental Change. PLoS Comput. Biol. 11 (7) (2015)
Jae Kyoung Kim, Kresimir Josic, Matthew R. Bennett
The relationship between stochastic and deterministic quasi-steady state approximations. BMC Syst. Biol. 9 (2015)
Alan Veliz-Cuba, Harel Z. Shouval, Kresimir Josic, Zachary P. Kilpatrick
Networks that learn the precise timing of event sequences. J. Comput. Neurosci. 39 (3) (2015)
Samuel Carroll, Kresimir Josic, Zachary P. Kilpatrick
Encoding certainty in bump attractors. J. Comput. Neurosci. 37 (1) (2014)
James Trousdale, Yu Hu, Eric Shea-Brown, Kresimir Josic
A generative spike train model with time-structured higher order correlations. Frontiers Comput. Neurosci. 7 (2013)
James Trousdale, Yu Hu, Eric Shea-Brown, Kresimir Josic
Impact of Network Structure and Cellular Response on Spike Time Correlations. PLoS Comput. Biol. 8 (3) (2012)
Eftychios A. Pnevmatikakis, Keith J. Kelleher, Rebecca Chen, Petter Saggau, Kresimir Josic, Liam Paninski
Fast Spatiotemporal Smoothing of Calcium Measurements in Dendritic Trees. PLoS Comput. Biol. 8 (6) (2012)
Kresimir Josic, José Manuel López, William Ott, LieJune Shiau, Matthew R. Bennett
Stochastic Delay Accelerates Signaling in Gene Networks. PLoS Comput. Biol. 7 (11) (2011)
Robert Rosenbaum, Kresimir Josic
Mechanisms That Modulate the Transfer of Spiking Correlations. Neural Comput. 23 (5) (2011)
Robert Rosenbaum, James Trousdale, Kresimir Josic
Pooling and correlated neural activity. Frontiers Comput. Neurosci. 4 (2010)
Fabien Marpeau, Aditya Barua, Kresimir Josic
A finite volume method for stochastic integrate-and-fire models. J. Comput. Neurosci. 26 (3) (2009)
Kresimir Josic, Eric Shea-Brown, Brent Doiron, Jaime de la Rocha
Stimulus-Dependent Correlations and Population Codes. Neural Comput. 21 (10) (2009)
Yudong Sun, Bogdan Danila, Kresimir Josic, Kevin E. Bassler
Improved community structure detection using a modified fine tuning strategy CoRR (2009)
Yulia Timofeeva, S. J. Cox, Stephen Coombes, Kresimir Josic
Democratization in a passive dendritic tree: an analytical investigation. J. Comput. Neurosci. 25 (2) (2008)
Keith J. Kelleher, V. Hajdik, C. M. Colbert, Kresimir Josic
Learning by structural remodeling in a class of single cell models. J. Comput. Neurosci. 25 (2) (2008)
Kresimir Josic, Robert Rosenbaum
Unstable Solutions of Nonautonomous Linear Differential Equations. SIAM Rev. 50 (3) (2008)
Eran Elhaik, Dan Graur, Kresimir Josic
'Genome order index' should not be used for defining compositional constraints in nucleotide sequences. Comput. Biol. Chem. 32 (2) (2008)
Jonathan E. Rubin, Kresimir Josic
The Firing of an Excitable Neuron in the Presence of Stochastic Trains of Strong Synaptic Inputs. Neural Comput. 19 (5) (2007)
Stephen Coombes, Yulia Timofeeva, Carl-Magnus Svensson, Gabriel J. Lord, Kresimir Josic, S. J. Cox, C. M. Colbert
Branching dendrites with resonant membrane: a "sum-over-trips" approach. Biol. Cybern. 97 (2) (2007)
Martin Golubitsky, Kresimir Josic, Eric Shea-Brown
Winding Numbers and Average Frequencies in Phase Oscillator Networks. J. Nonlinear Sci. 16 (3) (2006)
Kresimir Josic, Eric Shea-Brown, Jeff Moehlis
Isochron. Scholarpedia 1 (8) (2006)
Jeff Moehlis, Kresimir Josic, Eric Shea-Brown
Periodic orbit. Scholarpedia 1 (7) (2006)
Kresimir Josic, Jonathan E. Rubin
Deriving Information about Architecture from Activity Patterns in Coupled Cell Systems. SIAM J. Appl. Dyn. Syst. 4 (1) (2005)
Robert L. Devaney, Kresimir Josic, Mónica Moreno Rocha, Pradipta Seal, Yakov Shapiro, Alex T. Frumosu
Playing Catch-up with Iterated Exponentials. Am. Math. Mon. 111 (8) (2004)
Robert L. Devaney, Kresimir Josic, Yakov Shapiro
Singular Perturbations of Quadratic Maps. Int. J. Bifurc. Chaos 14 (1) (2004)
Rachel Wells Hall, Kresimir Josic
The Mathematics of Musical Instruments. Am. Math. Mon. 108 (4) (2001)
Rachel Wells Hall, Kresimir Josic
Planetary Motion and the Duality of Force Laws. SIAM Rev. 42 (1) (2000)