Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy.
Austin E. Y. T. LefebvreGabriel SturmTing-Yu LinEmily StoopsMagdalena Preciado LopezBenjamin Kaufmann-MalagaKayley HakePublished in: CoRR (2024)
Keyphrases
- phase contrast
- microscopy images
- feature extraction
- confocal images
- cell segmentation
- cell nuclei
- low contrast
- automated analysis
- phase contrast microscopy
- blood flow
- microscopic images
- image analysis
- motion segmentation
- magnetic resonance
- fluorescence microscopy images
- log gabor filters
- pose estimation
- fully automatic
- real time
- feature vectors
- hierarchical representation
- feature extraction and classification
- automated segmentation
- left ventricular
- image processing
- texture feature extraction
- live cell imaging
- soccer game
- protein subcellular location
- feature selection
- preprocessing
- image registration
- high throughput
- particle filter
- automatic initialization
- image segmentation
- image stacks
- white blood cells
- principal component analysis
- medical images
- extracted features
- appearance model
- coarse to fine
- region growing
- segmentation algorithm
- object tracking
- motion model
- texture features
- feature space
- object segmentation
- ct and mr images
- multiscale
- face recognition
- multiple objects