Zekun Yin

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 18

Top Topics

Graphics Processing Units

Heterogeneous Platforms

Clustering Framework

Genomic Sequences

Top Venues

HPCC/SmartCity/DSS

Publications

Mingkai Wang, Zekun Yin, Lifeng Yan, Yang Yang, Fangjin Zhu, Xiaohui Duan, Xin Li, Bertil Schmidt, Weiguo Liu
RabbitTrim: Highly Optimized Trimming of Illumina Sequencing Data on Multi-core Platforms. ISBRA (2) (2024)
Lifeng Yan, Zekun Yin, Jinjin Li, Yang Yang, Tong Zhang, Fangjin Zhu, Xiaohui Duan, Bertil Schmidt, Weiguo Liu
RabbitSAlign: Accelerating Short-Read Alignment for CPU-GPU Heterogeneous Platforms. ISBRA (2) (2024)
Haoran Lin, Lifeng Yan, Qixin Chang, Haitian Lu, Chenlin Li, Quanjie He, Zeyu Song, Xiaohui Duan, Zekun Yin, Yuxuan Li, Zhao Liu, Wei Xue, Haohuan Fu, Lin Gan, Guangwen Yang, Weiguo Liu
O2ath: an OpenMP offloading toolkit for the sunway heterogeneous manycore platform. CCF Trans. High Perform. Comput. 6 (3) (2024)
Haoran Lin, Xinwei Qin, Shuang Qiu, Yi Sun, Zekun Yin, Weiguo Liu
Ray-based Elastic Distributed Data Parallel Framework with Distributed Data Cache. IPDPS Workshops (2023)
Wubing Wan, Lin Gan, Wenqiang Wang, Zekun Yin, Haodong Tian, Zhenguo Zhang, Yinuo Wang, Mengyuan Hua, Xiaohui Liu, Shengye Xiang, Zhongqiu He, Zijia Wang, Ping Gao, Xiaohui Duan, Weiguo Liu, Wei Xue, Haohuan Fu, Guangwen Yang, Xiaofei Chen, Zeyu Song, Yaojian Chen, Xin Liu, Wei Zhang
69.7-PFlops Extreme Scale Earthquake Simulation with Crossing Multi-faults and Topography on Sunway. SC (2023)
Xiaoming Xu, Zekun Yin, Lifeng Yan, Huiguang Yi, Hua Wang, Bertil Schmidt, Weiguo Liu
RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures. Bioinform. 39 (10) (2023)
Hao Zhang, Honglei Song, Xiaoming Xu, Qixin Chang, Mingkai Wang, Yanjie Wei, Zekun Yin, Bertil Schmidt, Weiguo Liu
RabbitFX: Efficient Framework for FASTA/Q File Parsing on Modern Multi-Core Platforms. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (3) (2023)
Borui Xu, Zeyi Wen, Lifeng Yan, Zhan Zhao, Zekun Yin, Weiguo Liu, Bingsheng He
Leveraging Data Density and Sparsity for Efficient SVM Training on GPUs. ICDM (2023)
Haoran Lin, Lifeng Yan, Qixin Chang, Haitian Lu, Chenlin Li, Quanjie He, Zeyu Song, Xiaohui Duan, Zekun Yin, Yuxuan Li, Zhao Liu, Wei Xue, Haohuan Fu, Lin Gan, Guangwen Yang, Weiguo Liu
O2ATH: An OpenMP Offloading Toolkit for the Sunway Heterogeneous Manycore Platform. CoRR (2023)
Lifeng Yan, Zekun Yin, Hao Zhang, Zhan Zhao, Mingkai Wang, André Müller, Robin Kobus, Yanjie Wei, Beifang Niu, Bertil Schmidt, Weiguo Liu
RabbitQCPlus: More Efficient Quality Control for Sequencing Data. BIBM (2022)
Hao Zhang, Qixin Chang, Zekun Yin, Xiaoming Xu, Yanjie Wei, Bertil Schmidt, Weiguo Liu
RabbitV: fast detection of viruses and microorganisms in sequencing data on multi-core architectures. Bioinform. 38 (10) (2022)
Zekun Yin, Hao Zhang, Meiyang Liu, Wen Zhang, Honglei Song, Haidong Lan, Yanjie Wei, Beifang Niu, Bertil Schmidt, Weiguo Liu
RabbitQC: high-speed scalable quality control for sequencing data. Bioinform. 37 (4) (2021)
Zekun Yin, Xiaoming Xu, Jinxiao Zhang, Yanjie Wei, Bertil Schmidt, Weiguo Liu
RabbitMash: accelerating hash-based genome analysis on modern multi-core architectures. Bioinform. 37 (6) (2021)
Xiaoming Xu, Yuandong Chan, Kai Xu, Jikai Zhang, Xiaoning Wang, Zekun Yin, Weiguo Liu
SLPal: Accelerating Long Sequence Alignment on Many-Core and Multi-Core Architectures. BIBM (2020)
Zekun Yin, Tianyu Zhang, André Müller, Hui Liu, Yanjie Wei, Bertil Schmidt, Weiguo Liu
Efficient Parallel Sort on AVX-512-Based Multi-Core and Many-Core Architectures. HPCC/SmartCity/DSS (2019)
Zekun Yin, Hao Zhang, Kai Xu, Yuandong Chan, Shaoliang Peng, Xiaoning Wang, Bertil Schmidt, Weiguo Liu
XLCS: A New Bit-Parallel Longest Common Subsequence Algorithm on Xeon Phi Clusters. HPCC/SmartCity/DSS (2019)
Zekun Yin, Xiaoming Xu, Kaichao Fan, Ruilin Li, Weizhong Li, Weiguo Liu, Beifang Niu
DGCF: A Distributed Greedy Clustering Framework for Large-scale Genomic Sequences. BIBM (2019)
Haohuan Fu, Conghui He, Bingwei Chen, Zekun Yin, Zhenguo Zhang, Wenqiang Zhang, Tingjian Zhang, Wei Xue, Weiguo Liu, Wanwang Yin, Guangwen Yang, Xiaofei Chen
18.9-Pflops nonlinear earthquake simulation on Sunway TaihuLight: enabling depiction of 18-Hz and 8-meter scenarios. SC (2017)