Beifang Niu

Publication Activity (10 Years)

Years Active: 2007-2024
Publications (10 Years): 19

Top Topics

Computational Methods

Visual Analytics

Quality Control

Top Venues

Briefings Bioinform.

Genom. Proteom. Bioinform.

Publications

Huijuan Chen, Bing Wang, Lili Cai, Xiaotian Yang, Yali Hu, Yiran Zhang, Xue Leng, Wen Liu, Dongjie Fan, Beifang Niu, Qiming Zhou
A comprehensive performance evaluation, comparison, and integration of computational methods for detecting and estimating cross-contamination of human samples in cancer next-generation sequencing analysis. J. Biomed. Informatics 152 (2024)
Weier Liu, Yangde Feng, Ruilin Li, Chenhan Bai, Beifang Niu
Peridynamic modeling for multiscale heat transport of phonon Boltzmann transport equation. Comput. Phys. Commun. 299 (2024)
Quan Xu, Yueyue Liu, Dawei Sun, Xiaoqian Huang, Feihong Li, Jincheng Zhai, Yang Li, Qiming Zhou, Niansong Qian, Beifang Niu
OncoCTMiner: streamlining precision oncology trial matching via molecular profile analysis. Database J. Biol. Databases Curation 2023 (2023)
Haijing Luan, Taiyuan Hu, Jifang Hu, Ruilin Li, Detao Ji, Jiayin He, Xiaohong Duan, Chunyan Yang, Yajun Gao, Fan Chen, Beifang Niu
Multi-class Cancer Classification of Whole Slide Images Through Transformer and Multiple Instance Learning. ISBRA (2023)
Lifeng Yan, Zekun Yin, Hao Zhang, Zhan Zhao, Mingkai Wang, André Müller, Robin Kobus, Yanjie Wei, Beifang Niu, Bertil Schmidt, Weiguo Liu
RabbitQCPlus: More Efficient Quality Control for Sequencing Data. BIBM (2022)
Quan Xu, Yueyue Liu, Jifang Hu, Xiaohong Duan, Niuben Song, Jiale Zhou, Jincheng Zhai, Junyan Su, Siyao Liu, Fan Chen, Wei Zheng, Zhongjia Guo, Hexiang Li, Qiming Zhou, Beifang Niu
OncoPubMiner: a platform for mining oncology publications. Briefings Bioinform. 23 (5) (2022)
Shiyu Cheng, Xiaochen Li, Guihua Shan, Beifang Niu, Yang Wang, Maokang Luo
ACMViz: a visual analytics approach to understand DRL-based autonomous control model. J. Vis. 25 (2) (2022)
Zekun Yin, Hao Zhang, Meiyang Liu, Wen Zhang, Honglei Song, Haidong Lan, Yanjie Wei, Beifang Niu, Bertil Schmidt, Weiguo Liu
RabbitQC: high-speed scalable quality control for sequencing data. Bioinform. 37 (4) (2021)
Xinyin Han, Shuying Zhang, Daniel Cui Zhou, Dongliang Wang, Xiaoyu He, Danyang Yuan, Ruilin Li, Jiayin He, Xiaohong Duan, Michael C. Wendl, Li Ding, Beifang Niu
MSIsensor-ct: microsatellite instability detection using cfDNA sequencing data. Briefings Bioinform. 22 (5) (2021)
Xiaoyu He, Shanyu Chen, Ruilin Li, Xinyin Han, Zhipeng He, Danyang Yuan, Shuying Zhang, Xiaohong Duan, Beifang Niu
Comprehensive fundamental somatic variant calling and quality management strategies for human cancer genomes. Briefings Bioinform. 22 (3) (2021)
Shiyu Cheng, Han-Wei Shen, Guihua Shan, Beifang Niu, Weihua Bai
Visual analysis of meteorological satellite data via model-agnostic meta-learning. J. Vis. 24 (2) (2021)
Danyang Yuan, Xiaoyu He, Xinyin Han, Chunyan Yang, Fei Liu, Shuying Zhang, Haijing Luan, Ruilin Li, Jiayin He, Xiaohong Duan, Dongliang Wang, Qiming Zhou, Sujun Gao, Beifang Niu
Comprehensive review and evaluation of computational methods for identifying FLT3-internal tandem duplication in acute myeloid leukaemia. Briefings Bioinform. 22 (5) (2021)
Shanyu Chen, Xiaoyu He, Ruilin Li, Xiaohong Duan, Beifang Niu
HotSpot3D web server: an integrated resource for mutation analysis in protein 3D structures. Bioinform. 36 (12) (2020)
Chuangchuang Dai, Xueying Yang, Meikang Qiu, Xiaobing Guo, Zhonghua Lu, Beifang Niu
Digital Currency Investment Strategy Framework Based on Ranking. ICA3PP (3) (2020)
Chuangchuang Dai, Haijing Luan, Qingbing Yu, Xiaoyu He, Yunhao Wang, Bincheng Shuai, Xiaobing Guo, Zhonghua Lu, Beifang Niu
Change-Encryption: Encryption Using Spatiotemporal Information as a Function Model. CSCloud/EdgeCom (2020)
Ruilin Li, Xiaoyu He, Chuangchuang Dai, Haidong Zhu, Xianyu Lang, Wei Chen, Xiaodong Li, Dan Zhao, Yu Zhang, Xinyin Han, Tie Niu, Yi Zhao, Rongqiang Cao, Rong He, Zhonghua Lu, Xuebin Chi, Weizhong Li, Beifang Niu
Gclust: A Parallel Clustering Tool for Microbial Genomic Data. Genom. Proteom. Bioinform. 17 (5) (2019)
Shanyu Chen, Zhipeng He, Xinyin Han, Xiaoyu He, Ruilin Li, Haidong Zhu, Dan Zhao, Chuangchuang Dai, Yu Zhang, Zhonghua Lu, Xuebin Chi, Beifang Niu
How Big Data and High-performance Computing Drive Brain Science. Genom. Proteom. Bioinform. 17 (4) (2019)
Shuo Li, Zhonghua Lu, Yongze Sun, Sungen Deng, Beifang Niu
Distributed Parameter Optimization Scheduling Strategy and System Design Based on Mesos. BigDataSecurity/HPSC/IDS (2019)
Zekun Yin, Xiaoming Xu, Kaichao Fan, Ruilin Li, Weizhong Li, Weiguo Liu, Beifang Niu
DGCF: A Distributed Greedy Clustering Framework for Large-scale Genomic Sequences. BIBM (2019)
Beifang Niu, Kai Ye, Qunyuan Zhang, Charles Lu, Mingchao Xie, Michael D. McLellan, Michael C. Wendl, Li Ding
MSIsensor: microsatellite instability detection using paired tumor-normal sequence data. Bioinform. 30 (7) (2014)
Zhengwei Zhu, Beifang Niu, Jing Chen, Sitao Wu, Shulei Sun, Weizhong Li
MGAviewer: a desktop visualization tool for analysis of metagenomics alignment data. Bioinform. 29 (1) (2013)
Weizhong Li, Limin Fu, Beifang Niu, Sitao Wu, John C. Wooley
Ultrafast clustering algorithms for metagenomic sequence analysis. Briefings Bioinform. 13 (6) (2012)
Limin Fu, Beifang Niu, Zhengwei Zhu, Sitao Wu, Weizhong Li
CD-HIT: accelerated for clustering the next-generation sequencing data. Bioinform. 28 (23) (2012)
Beifang Niu, Zhengwei Zhu, Limin Fu, Sitao Wu, Weizhong Li
FR-HIT, a very fast program to recruit metagenomic reads to homologous reference genomes. Bioinform. 27 (12) (2011)
Ying Huang, Beifang Niu, Ying Gao, Limin Fu, Weizhong Li
CD-HIT Suite: a web server for clustering and comparing biological sequences. Bioinform. 26 (5) (2010)
Beifang Niu, Limin Fu, Shulei Sun, Weizhong Li
Artificial and natural duplicates in pyrosequencing reads of metagenomic data. BMC Bioinform. 11 (2010)
Beifang Niu, Xianyu Lang, Zhonghua Lu, Xuebin Chi
ScBioGrid: a commodity supercomputing environment supporting bioinformatics research. Int. J. Comput. Math. 84 (2) (2007)