Yongqing Zhang

Publication Activity (10 Years)

Years Active: 1994-2024
Publications (10 Years): 51

Top Topics

Norm Regularization

Top Venues

Briefings Bioinform.

Comput. Biol. Medicine

Comput. Biol. Chem.

Publications

Dongrui Gao, Pengrui Li, Manqing Wang, Yujie Liang, Shihong Liu, Jiliu Zhou, Lutao Wang, Yongqing Zhang
CSF-GTNet: A Novel Multi-Dimensional Feature Fusion Network Based on Convnext-GeLU- BiLSTM for EEG-Signals-Enabled Fatigue Driving Detection. IEEE J. Biomed. Health Informatics 28 (5) (2024)
Meiqin Gong, Yun Yu, Zixuan Wang, Junming Zhang, Xiongyi Wang, Cheng Fu, Yongqing Zhang, Xiaodong Wang
scAuto as a comprehensive framework for single-cell chromatin accessibility data analysis. Comput. Biol. Medicine 171 (2024)
Dongrui Gao, Haokai Zhang, Pengrui Li, Tian Tang, Shihong Liu, Zhihong Zhou, Shaofei Ying, Ye Zhu, Yongqing Zhang
A Local-Ascending-Global Learning Strategy for Brain-Computer Interface. AAAI (2024)
Liqi Lin, Pengrui Li, Qinghua Wang, Binnan Bai, Ruifang Cui, Zhenxia Yu, Dongrui Gao, Yongqing Zhang
An EEG-based cross-subject interpretable CNN for game player expertise level classification. Expert Syst. Appl. 237 (Part C) (2024)
Dongrui Gao, Wen Yang, Pengrui Li, Shihong Liu, Tiejun Liu, Manqing Wang, Yongqing Zhang
A multiscale feature fusion network based on attention mechanism for motor imagery EEG decoding. Appl. Soft Comput. 151 (2024)
Dongrui Gao, Kejie Wang, Manqing Wang, Jiliu Zhou, Yongqing Zhang
SFT-Net: A Network for Detecting Fatigue From EEG Signals by Combining 4D Feature Flow and Attention Mechanism. IEEE J. Biomed. Health Informatics 28 (8) (2024)
Hao Hu, Boxing Qian, Yongqing Zhang, Wenpan Li
Digital Image Correlation with a Prism Camera and Its Application in Complex Deformation Measurement. Sensors 23 (12) (2023)
Yuhang Liu, Zixuan Wang, Jiaheng Lv, Yongqing Zhang
DeepChrom: A Diffusion-Based Framework for Long-Tailed Chromatin State Prediction. PRCV (3) (2023)
Shuwen Xiong, Zixuan Wang, Junming Zhang, Hong Luo, Yongqing Zhang, Quan Zou
KDProg: A Knowledge distillation graph neural network for cancer prognosis prediction and analysis. BIBM (2023)
Pengrui Li, Yongqing Zhang, Shihong Liu, Liqi Lin, Haokai Zhang, Tian Tang, Dongrui Gao
An EEG-based Brain Cognitive Dynamic Recognition Network for representations of brain fatigue. Appl. Soft Comput. 146 (2023)
Yuhang Liu, Zixuan Wang, Hao Yuan, Guiquan Zhu, Yongqing Zhang
HEAP: a task adaptive-based explainable deep learning framework for enhancer activity prediction. Briefings Bioinform. 24 (5) (2023)
Manqing Wang, Liangyu Zhang, Haixiang Yu, Siyu Chen, Xiaomeng Zhang, Yongqing Zhang, Dongrui Gao
A deep learning network based on CNN and sliding window LSTM for spike sorting. Comput. Biol. Medicine 159 (2023)
Yuhang Liu, Hao Yuan, Qiang Zhang, Zixuan Wang, Shuwen Xiong, Naifeng Wen, Yongqing Zhang
Multiple sequence alignment based on deep reinforcement learning with self-attention and positional encoding. Bioinform. 39 (10) (2023)
Yongqing Zhang, Zhiqiang Liu, Weidong Wang, Hui Li, Wentao Shi
Infinity-Norm Weighted Low-Order Sparse Iterative DOA Estimation Under Impulsive Noise. ICSPCC (2023)
Zixuan Wang, Shuwen Xiong, Yun Yu, Jiliu Zhou, Yongqing Zhang
HAMPLE: deciphering TF-DNA binding mechanism in different cellular environments by characterizing higher-order nucleotide dependency. Bioinform. 39 (5) (2023)
Zhu Ye, Yuan Jing, Qinghua Wang, Pengrui Li, Zhihong Liu, Mingjing Yan, Yongqing Zhang, Dongrui Gao
Emotion recognition based on convolutional gated recurrent units with attention. Connect. Sci. 35 (1) (2023)
Meiqin Gong, Yuchen He, Maocheng Wang, Yongqing Zhang, Chunli Ding
Interpretable single-cell transcription factor prediction based on deep learning with attention mechanism. Comput. Biol. Chem. 106 (2023)
Yongqing Zhang, Wenpeng Cao, Lixiao Feng, Manqing Wang, Tianyu Geng, Jiliu Zhou, Dongrui Gao
SHNN: A single-channel EEG sleep staging model based on semi-supervised learning. Expert Syst. Appl. 213 (Part) (2023)
Shuwen Xiong, Zixuan Wang, Junming Zhang, Guiquan Zhu, Yongqing Zhang, Quan Zou
HGTDG: An Interpretable Heterogeneous Graph Transformer Framework for Cancer Driver Gene Prediction. BIBM (2023)
Yuhang Liu, Tianhao Li, Zixuan Wang, Guiquan Zhu, Yongqing Zhang, Quan Zou
Exploring Parameter-Efficient Fine-Tuning of a Large-Scale Pre-Trained Model for scRNA-seq Cell Type Annotation. BIBM (2023)
Bo Peng, Yongqing Zhang, Manqing Wang, Jun Chen, Dongrui Gao
T-A-MFFNet: Multi-feature fusion network for EEG analysis and driving fatigue detection based on time domain network and attention network. Comput. Biol. Chem. 104 (2023)
Yongqing Zhang, Zixuan Wang, Yuanqi Zeng, Yuhang Liu, Shuwen Xiong, Maocheng Wang, Jiliu Zhou, Quan Zou
A novel convolution attention model for predicting transcription factor binding sites by combination of sequence and shape. Briefings Bioinform. 23 (1) (2022)
Zixuan Wang, Meiqin Gong, Yuhang Liu, Shuwen Xiong, Maocheng Wang, Jiliu Zhou, Yongqing Zhang
Towards a better understanding of TF-DNA binding prediction from genomic features. Comput. Biol. Medicine 149 (2022)
Yongqing Zhang, Qiang Zhang, Yuhang Liu, Meng Lin, Chunli Ding
Multiple Sequence Alignment based on deep Q network with negative feedback policy. Comput. Biol. Chem. 101 (2022)
Yongqing Zhang, Qiang Zhang, Jiliu Zhou, Quan Zou
A survey on the algorithm and development of multiple sequence alignment. Briefings Bioinform. 23 (3) (2022)
Yongqing Zhang, Yuchen He, Qingyuan Chen, Yihan Yang, Meiqin Gong
Fusion prior gene network for high reliable single-cell gene regulatory network inference. Comput. Biol. Medicine 143 (2022)
Hao Hu, Bin Wei, Shuang Mei, Jin Liang, Yongqing Zhang
A Two-Step Calibration Method for Vision Measurement With Large Field of View. IEEE Trans. Instrum. Meas. 71 (2022)
Zixuan Wang, Yongqing Zhang, Yun Yu, Maocheng Wang, Yuhang Liu, Quan Zou
Single-cell TF-DNA binding prediction and analysis based on transfer learning framework. BIBM (2022)
Yongqing Zhang, Meng Lin, Yihan Yang, Chunli Ding
A hybrid ensemble and evolutionary algorithm for imbalanced classification and its application on bioinformatics. Comput. Biol. Chem. 98 (2022)
Yongqing Zhang, Yuhang Liu, Zixuan Wang, Maocheng Wang, Shuwen Xiong, Quan Zou
Predicting cell type-specific effects of variants on TF-DNA binding by meta-learning. BIBM (2022)
Yongqing Zhang, Zixuan Wang, Yuanqi Zeng, Jiliu Zhou, Quan Zou
High-resolution transcription factor binding sites prediction improved performance and interpretability by deep learning method. Briefings Bioinform. 22 (6) (2021)
Yongqing Zhang, Zixuan Wang, Yuhang Liu, Libo Lu, Xiaoyao Tan, Quan Zou
By hybrid neural networks for prediction and interpretation of transcription factor binding sites based on multi-omics. BIBM (2021)
Chan Diao, Yu Liu, Liang Zhao, Ga Zhuo, Yongqing Zhang
Regional-scale vegetation-climate interactions on the Qinghai-Tibet Plateau. Ecol. Informatics 65 (2021)
Jianbo Li, Ligang Wang, Dawei Yu, Junfeng Hao, Longchao Zhang, Adeniyi C. Adeola, Bingyu Mao, Yun Gao, Shifang Wu, Chunling Zhu, Yongqing Zhang, Jilong Ren, Changgai Mu, David M. Irwin, Lixian Wang, Tang Hai, Haibing Xie, Yaping Zhang
Single-cell RNA Sequencing Reveals Thoracolumbar Vertebra Heterogeneity and Rib-genesis in Pigs. Genom. Proteom. Bioinform. 19 (3) (2021)
Zixuan Wang, Xiaoyao Tan, Beichen Li, Yuhang Liu, Qi Shao, Zijing Li, Yihan Yang, Yongqing Zhang
BindTransNet: A Transferable Transformer-Based Architecture for Cross-Cell Type DNA-Protein Binding Sites Prediction. ISBRA (2021)
Yongqing Zhang, Siyu Chen, Wenpeng Cao, Peng Guo, Dongrui Gao, Manqing Wang, Jiliu Zhou, Ting Wang
MFFNet: Multi-dimensional Feature Fusion Network based on attention mechanism for sEMG analysis to detect muscle fatigue. Expert Syst. Appl. 185 (2021)
Yongqing Zhang, Shaojie Qiao, Yuanqi Zeng, Dongrui Gao, Nan Han, Jiliu Zhou
CAE-CNN: Predicting transcription factor binding site with convolutional autoencoder and convolutional neural network. Expert Syst. Appl. 183 (2021)
Yu Yun, Wei Xia, Yongqing Zhang, Quanxue Gao, Xinbo Gao
Self-representation and Class-Specificity Distribution Based Multi-View Clustering. Neurocomputing 437 (2021)
Dingxiang Liu, Shaojie Qiao, Nan Han, Tao Wu, Rui Mao, Yongqing Zhang, Changan Yuan, Yueqiang Xiao
SOTB: Semi-Supervised Oversampling Approach Based on Trigonal Barycenter Theory. IEEE Access 8 (2020)
Yongqing Zhang, Shaojie Qiao, Shengjie Ji, Yizhou Li
DeepSite: bidirectional LSTM and CNN models for predicting DNA-protein binding. Int. J. Mach. Learn. Cybern. 11 (4) (2020)
Xi Xiong, Shaojie Qiao, Yuanyuan Li, Nan Han, Guan Yuan, Yongqing Zhang
A point-of-interest suggestion algorithm in Multi-source geo-social networks. Eng. Appl. Artif. Intell. 88 (2020)
Yuanqi Zeng, Meiqin Gong, Meng Lin, Dongrui Gao, Yongqing Zhang
A Review About Transcription Factor Binding Sites Prediction Based on Deep Learning. IEEE Access 8 (2020)
Yongqing Zhang, Qingyuan Chen, Dongrui Gao, Quan Zou
GRRFNet: Guided Regularized Random Forest-based Gene Regulatory Network Inference Using Data Integration. BIBM (2020)
Yongqing Zhang, Shaojie Qiao, Shengjie Ji, Nan Han, Dingxiang Liu, Jiliu Zhou
Identification of DNA-protein binding sites by bootstrap multiple convolutional neural networks on sequence information. Eng. Appl. Artif. Intell. 79 (2019)
Yongqing Zhang, Shaojie Qiao, Rongzhao Lu, Nan Han, Dingxiang Liu, Jiliu Zhou
How to balance the bioinformatics data: pseudo-negative sampling. BMC Bioinform. (25) (2019)
Han Yuan, Yongqing Zhang, Wenfu Xu
Design and Experiments of a Redundantly Actuated Cable-Driven Parallel Robot. ROBIO (2018)
Yongqing Zhang, Shaojie Qiao, Shengjie Ji, Jiliu Zhou
ENSEMBLE-CNN: Predicting DNA Binding Sites in Protein Sequences by an Ensemble Deep Learning Method. ICIC (2) (2018)
Yongqing Zhang, Tianyu Geng, Xi Wu, Jiliu Zhou, Dongrui Gao
ICANet: a simple cascade linear convolution network for face recognition. EURASIP J. Image Video Process. 2018 (2018)
Wei Jiang, Jie Zhang, Yongqing Zhang
Concept Factorization by Joint Locality-constrained and ℓ 2, 1-norm Regularization for Image Representation. J. Multiple Valued Log. Soft Comput. 31 (1-2) (2018)
Yongqing Zhang, Yi Chen, Malu Zhang, Xi Wu, Jiliu Zhou, Hong Qu
ERMPD: An efficient and robustness membrane potential driven supervised learning in spiking neural networks. SSCI (2017)
Yongqing Zhang, Xiaoyi Cao, Sheng Zhong
GeNemo: a search engine for web-based functional genomic data. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Yongqing Zhang, Yi-Fei Pu, Haisen Zhang, Yabo Su, Lifang Zhang, Jiliu Zhou
Using gene expression programming to infer gene regulatory networks from time-series data. Comput. Biol. Chem. 47 (2013)
Lei Duan, Changjie Tang, Xiaosong Li, Guozhu Dong, Xianming Wang, Jie Zuo, Min Jiang, Zhongqi Li, Yongqing Zhang
Mining effective multi-segment sliding window for pathogen incidence rate prediction. Data Knowl. Eng. 87 (2013)
Yongqing Zhang, Danling Zhang, Gang Mi, Daichuan Ma, Gongbing Li, Yanzhi Guo, Menglong Li, Min Zhu
Using ensemble methods to deal with imbalanced data in predicting protein-protein interactions. Comput. Biol. Chem. 36 (2012)
Xia Wang, Gang Mi, Cuicui Wang, Yongqing Zhang, Juan Li, Yanzhi Guo, Xuemei Pu, Menglong Li
Prediction of flavin mono-nucleotide binding sites using modified PSSM profile and ensemble support vector machine. Comput. Biol. Medicine 42 (11) (2012)
Limei Zhou, Yongqing Zhang, Hao Lan Zhang
Marketing Positioning System Designing Based on Extenics. Web Intelligence/IAT Workshops (2012)
Maureen Stone, Moise H. Goldstein Jr., Yongqing Zhang
Principal component analysis of cross sections of tongue shapes in vowel production. Speech Commun. 22 (2-3) (1997)
Yongqing Zhang, Martin T. Hagan
A reduced parameter bilinear time series model. IEEE Trans. Signal Process. 42 (7) (1994)