Xuemei Pu

Publication Activity (10 Years)

Years Active: 2012-2024
Publications (10 Years): 19

Top Topics

Complex Background

Molecular Dynamics

Top Venues

J. Chem. Inf. Model.

J. Comput. Aided Mol. Des.

Comput. Biol. Medicine

Publications

Jianfang Chen, Yuanpeng Song, Luhan Ma, Yizhou Jin, Jin Yu, Yanzhi Guo, Yan Huang, Xuemei Pu
Computational insights into diverse binding modes of the allosteric modulator and their regulation on dopamine D1 receptor. Comput. Biol. Medicine 173 (2024)
Jian He, Menglong Li, Jiangguo Qiu, Xuemei Pu, Yanzhi Guo
HOPEXGB: A Consensual Model for Predicting miRNA/lncRNA-Disease Associations Using a Heterogeneous Disease-miRNA-lncRNA Information Network. J. Chem. Inf. Model. 64 (7) (2024)
Jiali Guo, Ming Sun, Xueyan Zhao, Chaojie Shi, Haoming Su, Yanzhi Guo, Xuemei Pu
General Graph Neural Network-Based Model To Accurately Predict Cocrystal Density and Insight from Data Quality and Feature Representation. J. Chem. Inf. Model. 63 (4) (2023)
Yanling Wu, Kun Li, Menglong Li, Xuemei Pu, Yanzhi Guo
Attention Mechanism-Based Graph Neural Network Model for Effective Activity Prediction of SARS-CoV-2 Main Protease Inhibitors: Application to Drug Repurposing as Potential COVID-19 Therapy. J. Chem. Inf. Model. 63 (22) (2023)
Shiqi Li, Xin Chen, Jianfang Chen, Binjian Wu, Jing Liu, Yanzhi Guo, Menglong Li, Xuemei Pu
Multi-omics integration analysis of GPCRs in pan-cancer to uncover inter-omics relationships and potential driver genes. Comput. Biol. Medicine 161 (2023)
Chuan Li, Jiangting Liu, Jianfang Chen, Yuan Yuan, Jin Yu, Qiaolin Gou, Yanzhi Guo, Xuemei Pu
An Interpretable Convolutional Neural Network Framework for Analyzing Molecular Dynamics Trajectories: a Case Study on Functional States for G-Protein-Coupled Receptors. J. Chem. Inf. Model. 62 (6) (2022)
Fuhui Zhang, Xin Chen, Jianfang Chen, Yanjiani Xu, Shiqi Li, Yanzhi Guo, Xuemei Pu
Probing Allosteric Regulation Mechanism of W7.35 on Agonist-Induced Activity for μOR by Mutation Simulation. J. Chem. Inf. Model. 62 (21) (2022)
Xin Chen, Yuan Yuan, Yichi Chen, Jin Yu, Jingzhou Wang, Jianfang Chen, Yanzhi Guo, Xuemei Pu
Biased Activation Mechanism Induced by GPCR Heterodimerization: Observations from μOR/δOR Dimers. J. Chem. Inf. Model. 62 (22) (2022)
Jianfang Chen, Jiangting Liu, Yuan Yuan, Xin Chen, Fuhui Zhang, Xuemei Pu
Molecular Mechanisms of Diverse Activation Stimulated by Different Biased Agonists for the β2-Adrenergic Receptor. J. Chem. Inf. Model. 62 (21) (2022)
Chuan Li, Chenghui Wang, Ming Sun, Yan Zeng, Yuan Yuan, Qiaolin Gou, Guangchuan Wang, Yanzhi Guo, Xuemei Pu
Correlated RNN Framework to Quickly Generate Molecules with Desired Properties for Energetic Materials in the Low Data Regime. J. Chem. Inf. Model. 62 (20) (2022)
Yiru Zhao, Yifan Zhou, Yuan Liu, Yinyi Hao, Menglong Li, Xuemei Pu, Chuan Li, Zhining Wen
Uncovering the prognostic gene signatures for the improvement of risk stratification in cancers by using deep learning algorithm coupled with wavelet transform. BMC Bioinform. 21 (1) (2020)
Wenxin Dai, Yuqing Mao, Rongao Yuan, Yijing Liu, Xuemei Pu, Chuan Li
A Novel Detector Based on Convolution Neural Networks for Multiscale SAR Ship Detection in Complex Background. Sensors 20 (9) (2020)
Liu Qin, Yanhong Liu, Menglong Li, Xuemei Pu, Yanzhi Guo
The landscape of miRNA-related ceRNA networks for marking different renal cell carcinoma subtypes. Briefings Bioinform. 21 (1) (2020)
Yinjie Xie, Wenxin Dai, Zhenxin Hu, Yijing Liu, Chuan Li, Xuemei Pu
A Novel Convolutional Neural Network Architecture for SAR Target Recognition. J. Sensors 2019 (2019)
Fuhui Zhang, Yuan Yuan, Minghui Xiang, Yanzhi Guo, Menglong Li, Yijing Liu, Xuemei Pu
Molecular Mechanism Regarding Allosteric Modulation of Ligand Binding and the Impact of Mutations on Dimerization for CCR5 Homodimer. J. Chem. Inf. Model. 59 (5) (2019)
Wen Hu, Liu Qin, Menglong Li, Xuemei Pu, Yanzhi Guo
Individually double minimum-distance definition of protein-RNA binding residues and application to structure-based prediction. J. Comput. Aided Mol. Des. 32 (12) (2018)
Yu Wang, Yanzhi Guo, Xuemei Pu, Menglong Li
Effective prediction of bacterial type IV secreted effectors by combined features of both C-termini and N-termini. J. Comput. Aided Mol. Des. 31 (11) (2017)
Yu Wang, Yanzhi Guo, Qifan Kuang, Xuemei Pu, Yue Ji, Zhihang Zhang, Menglong Li
A comparative study of family-specific protein-ligand complex affinity prediction based on random forest approach. J. Comput. Aided Mol. Des. 29 (4) (2015)
Yuanyuan Fu, Yanzhi Guo, Yuelong Wang, Jiesi Luo, Xuemei Pu, Menglong Li, Zhihang Zhang
Exploring the relationship between hub proteins and drug targets based on GO and intrinsic disorder. Comput. Biol. Chem. 56 (2015)
Lezheng Yu, Jiesi Luo, Yanzhi Guo, Yizhou Li, Xuemei Pu, Menglong Li
In silico identification of Gram-negative bacterial secreted proteins from primary sequence. Comput. Biol. Medicine 43 (9) (2013)
Wenli Qin, Yizhou Li, Juan Li, Lezheng Yu, Di Wu, Runyu Jing, Xuemei Pu, Yanzhi Guo, Menglong Li
Predicting deleterious non-synonymous single nucleotide polymorphisms in signal peptides based on hybrid sequence attributes. Comput. Biol. Chem. 36 (2012)
Xia Wang, Gang Mi, Cuicui Wang, Yongqing Zhang, Juan Li, Yanzhi Guo, Xuemei Pu, Menglong Li
Prediction of flavin mono-nucleotide binding sites using modified PSSM profile and ensemble support vector machine. Comput. Biol. Medicine 42 (11) (2012)