Viacheslav Fofanov

Publication Activity (10 Years)

Years Active: 2004-2018
Publications (10 Years): 1

Top Topics

Computationally Efficient

Top Venues

Publications

Tara N. Furstenau, Jill H. Cocking, Jason W. Sahl, Viacheslav Fofanov
Variant site strain typer (VaST): efficient strain typing using a minimal number of variant genomic sites. BMC Bioinform. 19 (1) (2018)
Drew H. Bryant, Mark Moll, Brian Y. Chen, Viacheslav Fofanov, Lydia E. Kavraki
Analysis of substructural variation in families of enzymatic proteins with applications to protein function prediction. BMC Bioinform. 11 (2010)
Antonio Martínez-Alcántara, Efren Ballesteros, Chen Feng, Mark Rojas, H. Koshinsky, Viacheslav Fofanov, Paul Havlak, Yuriy Fofanov
PIQA: pipeline for Illumina G1 genome analyzer data quality assessment. Bioinform. 25 (18) (2009)
David M. Kristensen, R. Matthew Ward, Andreas Martin Lisewski, Serkan Erdin, Brian Y. Chen, Viacheslav Fofanov, Marek Kimmel, Lydia E. Kavraki, Olivier Lichtarge
Prediction of enzyme function based on 3D templates of evolutionarily important amino acids. BMC Bioinform. 9 (2008)
Brian Y. Chen, Drew H. Bryant, Viacheslav Fofanov, David M. Kristensen, Amanda E. Cruess, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki
Cavity Scaling: Automated Refinement of Cavity-Aware motifs in protein Function Prediction. J. Bioinform. Comput. Biol. 5 (2a) (2007)
Chris Reed, Viacheslav Fofanov, Catherine Putonti, Sergei Chumakov, Tom Slezak, Yuriy Fofanov
Effect of the mutation rate and background size on the quality of pathogen identification. Bioinform. 23 (20) (2007)
Brian Y. Chen, Viacheslav Fofanov, Drew H. Bryant, Bradley D. Dodson, David M. Kristensen, Andreas Martin Lisewski, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki
The MASH Pipeline for Protein Function Prediction and an Algorithm for the Geometric Refinement of 3D Motifs. J. Comput. Biol. 14 (6) (2007)
Aaron Skewes, Michael Quance, Catherine Putonti, Viacheslav Fofanov, Yuriy Fofanov
Statistical Properties of Short n-mers Located in the One Mismatch Area of Microbial Genomes. BIOCOMP (2007)
Brian Y. Chen, Viacheslav Fofanov, Drew H. Bryant, Bradley D. Dodson, David M. Kristensen, Andreas Martin Lisewski, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki
Geometric Sieving: Automated Distributed Optimization of 3D Motifs for Protein Function Prediction. RECOMB (2006)
Brian Y. Chen, Viacheslav Fofanov, David M. Kristensen, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki
Algorithms for Structural Comparison and Statistical Analysis of 3D Protein Motifs. Pacific Symposium on Biocomputing (2005)
Yuriy Fofanov, Yi Luo, Charles Katili, Jim Wang, Yuri Belosludtsev, Thomas Powdrill, Chetan Belapurkar, Viacheslav Fofanov, Tong-Bin Li, Sergei Chumakov, B. Montgomery Pettitt
How independent are the appearances of n-mers in different genomes? Bioinform. 20 (15) (2004)