Yuriy Fofanov

Publication Activity (10 Years)

Years Active: 2002-2023
Publications (10 Years): 5

Top Topics

High Throughput

Top Venues

Publications

George Golovko, Kamil Khanipov, Victor Reyes, Irina Pinchuk, Yuriy Fofanov
Identification of multivariable Boolean patterns in microbiome and microbial gene composition data. Biosyst. 233 (2023)
Levent Albayrak, Kamil Khanipov, George Golovko, Yuriy Fofanov
Broom: application for non-redundant storage of high throughput sequencing data. Bioinform. 35 (1) (2019)
Levent Albayrak, Kamil Khanipov, George Golovko, Yuriy Fofanov
Detection of multi-dimensional co-exclusion patterns in microbial communities. Bioinform. 34 (21) (2018)
Kamil Khanipov, Levent Albayrak, George Golovko, Maria Pimenova, Ioannis T. Pavlidis, Yuriy Fofanov, Khanipov K.
Novel Computational Approach for Identification of Highly Mutated Integrated HIV Genomes. BIBE (2017)
Levent L. Albayrak, Kamil Khanipov, Mark Rojas, George Golovko, Maria Pimenova, Michael Kosoy, Yuriy Fofanov
Exploration of Natural Alignment Scoring Rules and Clustering Thresholds for Bacterial Core/Pan Genome Analysis. BIBE (2017)
Kamil Khanipov, Georgiy Golovko, Mark Rojas, Levent Albayrak, Otto Dobretsberger, Maria Pimenova, Nels Olson, Sergei Chumakov, Yuriy Fofanov
CoCo: An application to store High-Throughput Sequencing data in compact text and binary file formats. BIBM (2015)
Georgiy Golovko, Kamil Khanipov, Mark Rojas, Antonio Martínez-Alcántara, Jesse J. Howard, Efren Ballesteros, Sharu Gupta, William Widger, Yuriy Fofanov
Slim-Filter: an interactive windows-based application for illumina genome analyzer data assessment and manipulation. BMC Bioinform. 13 (2012)
Stephen Huff, Mark Rojas, Paul Havlak, Yuriy Fofanov
Co-Evolution of the Influenza Virus and Its Hosts. BIOCOMP (2010)
Antonio Martínez-Alcántara, Efren Ballesteros, Chen Feng, Mark Rojas, H. Koshinsky, Viacheslav Fofanov, Paul Havlak, Yuriy Fofanov
PIQA: pipeline for Illumina G1 genome analyzer data quality assessment. Bioinform. 25 (18) (2009)
Chris Reed, Viacheslav Fofanov, Catherine Putonti, Sergei Chumakov, Tom Slezak, Yuriy Fofanov
Effect of the mutation rate and background size on the quality of pathogen identification. Bioinform. 23 (20) (2007)
Aaron Skewes, Michael Quance, Catherine Putonti, Viacheslav Fofanov, Yuriy Fofanov
Statistical Properties of Short n-mers Located in the One Mismatch Area of Microbial Genomes. BIOCOMP (2007)
Chen Feng, Catherine Putonti, Michael Quance, Stephen Huff, Andrey Belokrylov, S. Lennart Johnsson, Krishna Jayaraman, Michael Hogan, Yuriy Fofanov
Developing Assays for the Detection of Influenza in Human Samples. BIOCOMP (2007)
Dianhui Zhu, Yuriy Fofanov, Richard C. Willson, George E. Fox
A parallel computing algorithm for 16S rRNA probe design. J. Parallel Distributed Comput. 66 (12) (2006)
Catherine Putonti, Meizhuo Zhang, S. Lennart Johnsson, Yuriy Fofanov
Two Challenges in Genomics That Can Benefit from Petascale Platforms. Euro-Par Workshops (2006)
Dianhui Zhu, Yuriy Fofanov, Richard C. Willson, George E. Fox
ProkProbePicker (PPP): a Fast Program to Extract 16S rRNA-Targeted Probes for Prokaryotes. METMBS (2005)
Catherine Putonti, Yuriy Fofanov
Analysis of Promoter Regions for Essential Genes of Bacillus subtilis for Using PIDA. METMBS (2004)
Sergei Chumakov, Catherine Putonti, B. Montgomery Pettitt, George E. Fox, Richard C. Willson, Yuriy Fofanov
Using Statistical Properties of Short Subsequences in Microbial Identification. METMBS (2004)
Yuriy Fofanov, Yi Luo, Charles Katili, Jim Wang, Yuri Belosludtsev, Thomas Powdrill, Chetan Belapurkar, Viacheslav Fofanov, Tong-Bin Li, Sergei Chumakov, B. Montgomery Pettitt
How independent are the appearances of n-mers in different genomes? Bioinform. 20 (15) (2004)
Yuriy Fofanov, B. Montgomery Pettitt
Reconstruction of the genetic regulatory dynamics of the rat spinal cord development: Local Invariants approach. J. Biomed. Informatics 35 (5-6) (2002)