Thomas M. Keane

Publication Activity (10 Years)

Years Active: 2002-2023
Publications (10 Years): 10

Top Topics

Top Venues

Nucleic Acids Res.

Publications

Matthew Thakur, Alex Bateman, Cath Brooksbank, Mallory Ann Freeberg, Melissa Harrison, Matthew Hartley, Thomas M. Keane, Gerard J. Kleywegt, Andrew Leach, Maria Levchenko, Sarah L. Morgan, Ellen M. McDonagh, Sandra E. Orchard, Irene Papatheodorou, Sameer Velankar, Juan Antonio Vizcaíno, Rick Witham, Barbara Zdrazil, Johanna R. McEntyre
EMBL's European Bioinformatics Institute (EMBL-EBI) in 2022. Nucleic Acids Res. 51 (D1) (2023)
Mallory Ann Freeberg, Lauren A. Fromont, Teresa D'altri, Anna Foix Romero, Jorge Izquierdo Ciges, Aina Jene, Giselle Kerry, Mauricio Moldes, Roberto Ariosa, Silvia Bahena, Daniel Barrowdale, Marcos Casado Barbero, Dietmar Fernández-Orth, Carles Garcia-Linares, Emilio Garcia-Rios, Frédéric Haziza, Bela Juhasz, Oscar Martinez Llobet, Gemma Milla, Anand Mohan, Manuel Rueda, Aravind Sankar, Dona Shaju, Ashutosh Shimpi, Babita Singh, Coline Thomas, Sabela de la Torre, Umuthan Uyan, Claudia Vasallo, Paul Flicek, Roderic Guigó, Arcadi Navarro, Helen E. Parkinson, Thomas M. Keane, Jordi Rambla
The European Genome-phenome Archive in 2021. Nucleic Acids Res. 50 (D1) (2022)
Timothee Cezard, Fiona Cunningham, Sarah E. Hunt, Baron Koylass, Nitin Kumar, Gary Saunders, April Shen, Andres f Silva, Kirill Tsukanov, Sundararaman Venkataraman, Paul Flicek, Helen E. Parkinson, Thomas M. Keane
The European Variation Archive: a FAIR resource of genomic variation for all species. Nucleic Acids Res. 50 (D1) (2022)
Alexander Senf, Robert Davies, Frédéric Haziza, John Marshall, Juan Ramón Troncoso-Pastoriza, Oliver Hofmann, Thomas M. Keane
Crypt4GH: a file format standard enabling native access to encrypted data. Bioinform. 37 (17) (2021)
Andrew D. Yates, Jeremy Adams, Somesh Chaturvedi, Robert Davies, Matthew R. Laird, Rasko Leinonen, Rishi Nag, Nathan C. Sheffield, Oliver Hofmann, Thomas M. Keane
Refget: standardized access to reference sequences. Bioinform. 38 (1) (2021)
Clara Amid, Blaise T. F. Alako, Vishnukumar Balavenkataraman Kadhirvelu, Tony Burdett, Josephine Burgin, Jun Fan, Peter W. Harrison, Sam Holt, Abdulrahman Hussein, Eugene Ivanov, Suran Jayathilaka, Simon Kay, Thomas M. Keane, Rasko Leinonen, Xin Liu, Josué Martínez-Villacorta, Annalisa Milano, Amir Pakseresht, Nadim Rahman, Jeena Rajan, Kethi Reddy, Edward Richards, Dmitriy Smirnov, Alexey Sokolov, Senthilnathan Vijayaraja, Guy Cochrane
The European Nucleotide Archive in 2019. Nucleic Acids Res. 48 (Database-Issue) (2020)
Rachel Drysdale, Charles E. Cook, Robert Petryszak, Vivienne Baillie Gerritsen, Mary Barlow, Elisabeth Gasteiger, Franziska Gruhl, Jürgen Haas, Jerry Lanfear, Rodrigo Lopez, Nicole Redaschi, Heinz Stockinger, Daniel Teixeira, Aravind Venkatesan, Alex Bateman, Alan Bridge, Guy Cochrane, Robert D. Finn, Frank Oliver Glöckner, Marc Hanauer, Thomas M. Keane, Andrew Leach, Luana Licata, Per Oksvold, Sandra E. Orchard, Christine A. Orengo, Helen E. Parkinson, Bengt Persson, Pablo Porras, Jordi Rambla, Ana Rath, Charlotte Rodwell, Ugis Sarkans, Dietmar Schomburg, Ian Sillitoe, J. Dylan Spalding, Mathias Uhlén, Sameer Velankar, Juan Antonio Vizcaíno, Kalle von Feilitzen, Christian von Mering, Andrew D. Yates, Niklas Blomberg, Christine Durinx, Johanna R. McEntyre
The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences. Bioinform. 36 (8) (2020)
Jerome Kelleher, Mike Lin, Carl H. Albach, Ewan Birney, Robert Davies, Marina Gourtovaia, David Glazer, Cristina Y. González, David K. Jackson, Aaron Kemp, John Marshall, Andrew Nowak, Alexander Senf, Jaime M. Tovar-Corona, Alexander Vikhorev, Thomas M. Keane, GA4GH Streaming Task Team
htsget: a protocol for securely streaming genomic data. Bioinform. 35 (1) (2019)
Peter W. Harrison, Blaise T. F. Alako, Clara Amid, Ana Cerdeño-Tárraga, Iain Cleland, Sam Holt, Abdulrahman Hussein, Suran Jayathilaka, Simon Kay, Thomas M. Keane, Rasko Leinonen, Xin Liu, Josué Martínez-Villacorta, Annalisa Milano, Nima Pakseresht, Jeena Rajan, Kethi Reddy, Edward Richards, Marc Rossello, Nicole Silvester, Dmitriy Smirnov, Ana Luisa Toribio, Senthilnathan Vijayaraja, Guy Cochrane
The European Nucleotide Archive in 2018. Nucleic Acids Res. 47 (Database-Issue) (2019)
Nicole Silvester, Blaise T. F. Alako, Clara Amid, Ana Cerdeño-Tárraga, Laura Clarke, Iain Cleland, Peter W. Harrison, Suran Jayathilaka, Simon Kay, Thomas M. Keane, Rasko Leinonen, Xin Liu, Josué Martínez-Villacorta, Manuela Menchi, Kethi Reddy, Nima Pakseresht, Jeena Rajan, Marc Rossello, Dmitriy Smirnov, Ana Luisa Toribio, Daniel Vaughan, Vadim Zalunin, Guy Cochrane
The European Nucleotide Archive in 2017. Nucleic Acids Res. 46 (Database-Issue) (2018)
Thomas M. Keane, Kim Wong, David J. Adams
RetroSeq: transposable element discovery from next-generation sequencing data. Bioinform. 29 (3) (2013)
Andrew J. Page, Thomas M. Keane, Thomas J. Naughton
Multi-heuristic dynamic task allocation using genetic algorithms in a heterogeneous distributed system. J. Parallel Distributed Comput. 70 (7) (2010)
Samuel A. Assefa, Thomas M. Keane, Thomas D. Otto, Chris Newbold, Matthew Berriman
ABACAS: algorithm-based automatic contiguation of assembled sequences. Bioinform. 25 (15) (2009)
Andrew J. Page, Thomas M. Keane, Thomas J. Naughton
Scheduling in a dynamic heterogeneous distributed system using estimation error. J. Parallel Distributed Comput. 68 (11) (2008)
Thomas M. Keane, Thomas J. Naughton, James O. McInerney
MultiPhyl: a high-throughput phylogenomics webserver using distributed computing. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Thomas M. Keane, Andrew J. Page, Thomas J. Naughton, Simon A. A. Travers, James O. McInerney
Building Large Phylogenetic Trees on Coarse-Grained Parallel Machines. Algorithmica 45 (3) (2006)
Andrew J. Page, Shirley Coyle, Thomas M. Keane, Thomas J. Naughton, Charles Markham, Tomás E. Ward
Distributed Monte Carlo simulation of light transportation in tissue. IPDPS (2006)
Thomas M. Keane, Thomas J. Naughton
DSEARCH: sensitive database searching using distributed computing. Bioinform. 21 (8) (2005)
Thomas M. Keane, Andrew J. Page, James O. McInerney, Thomas J. Naughton
A High-Throughput Bioinformatics Distributed Computing Platform. CBMS (2005)
Thomas M. Keane, Thomas J. Naughton, Simon A. A. Travers, James O. McInerney, Grace P. McCormack
DPRml: distributed phylogeny reconstruction by maximum likelihood. Bioinform. 21 (7) (2005)
Andrew J. Page, Thomas M. Keane, Thomas J. Naughton
Bioinformatics on a Heterogeneous Java Distributed System. IPDPS (2005)
Andrew J. Page, Thomas M. Keane, Thomas J. Naughton
Adaptive Scheduling across a Distributed Computation Platform. ISPDC/HeteroPar (2004)
Andrew J. Page, Thomas M. Keane, Richard Allen, Thomas J. Naughton, John Waldron
Multi-tiered distributed computing platform. PPPJ (2003)
Thomas M. Keane, Richard Allen, Thomas J. Naughton, James O. McInerney, John Waldron
Distributed computing for DNA analysis. PPPJ/IRE (2002)
Thomas M. Keane, Richard Allen, Thomas J. Naughton, James O. McInerney, John Waldron
Distributed Java Platform with Programmable MIMD Capabilities. FIDJI (2002)