ABACAS: algorithm-based automatic contiguation of assembled sequences.
Samuel A. AssefaThomas M. KeaneThomas D. OttoChris NewboldMatthew BerrimanPublished in: Bioinform. (2009)
Keyphrases
- dynamic programming
- times faster
- k means
- single pass
- improved algorithm
- high accuracy
- simulated annealing
- detection algorithm
- optimization algorithm
- segmentation algorithm
- theoretical analysis
- preprocessing
- learning algorithm
- objective function
- optimal solution
- cost function
- hidden markov models
- computationally efficient
- np hard
- clustering method
- classification algorithm
- matching algorithm
- similarity measure
- experimental evaluation
- neural network
- expectation maximization
- evolutionary algorithm
- probabilistic model
- shortest path
- path planning
- computational cost
- selection algorithm