Tao Zeng

Publication Activity (10 Years)

Years Active: 2007-2023
Publications (10 Years): 22

Top Topics

Biological Data

Gene Expression

Top Venues

Briefings Bioinform.

Publications

Tao Zeng, Chuanchao Zhang
Editorial: Expert opinions in integrative bioinformatics: 2022. Frontiers Bioinform. 3 (2023)
Hui Tang, Xiangtian Yu, Rui Liu, Tao Zeng
Vec2image: an explainable artificial intelligence model for the feature representation and classification of high-dimensional biological data by vector-to-image conversion. Briefings Bioinform. 23 (2) (2022)
Chengming Zhang, Yabin Chen, Tao Zeng, Chuanchao Zhang, Luonan Chen
Deep latent space fusion for adaptive representation of heterogeneous multi-omics data. Briefings Bioinform. 23 (2) (2022)
Weifeng Guo, Xiangtian Yu, Qianqian Shi, Jing Liang, Shao-Wu Zhang, Tao Zeng
Performance assessment of sample-specific network control methods for bulk and single-cell biological data analysis. PLoS Comput. Biol. 17 (5) (2021)
Xiangtian Yu, Zijun Gan, Yan Xu, Sibao Wan, Min Li, Shijian Ding, Tao Zeng
Identifying Essential Methylation Patterns and Genes Associated With Stroke. IEEE Access 8 (2020)
Weifeng Guo, Shaowu Zhang, Tao Zeng, Tatsuya Akutsu, Luonan Chen
Network control principles for identifying personalized driver genes in cancer. Briefings Bioinform. 21 (5) (2020)
Yu-Hang Zhang, Tao Zeng, Xiaoyong Pan, Wei Guo, Zijun Gan, Yunhua Zhang, Tao Huang, Yu-Dong Cai
Screening Dys-Methylation Genes and Rules for Cancer Diagnosis by Using the Pan-Cancer Study. IEEE Access 8 (2020)
Wei Guo, Tao Zeng, Tao Huang, Yu-Dong Cai
Disease Cluster Detection and Functional Characterization. IEEE Access 8 (2020)
Jingsong Zhang, Cheng Bi, Yinglin Wang, Tao Zeng, Bo Liao, Luonan Chen
Efficient Mining Closed k-Mers from DNA and Protein Sequences. BigComp (2020)
Jihong Hu, Tao Zeng, Qiongmei Xia, Liyu Huang, Yesheng Zhang, Chuanchao Zhang, Yan Zeng, Hui Liu, Shilai Zhang, Guangfu Huang, Wenting Wan, Yi Ding, Fengyi Hu, Congdang Yang, Luonan Chen, Wen Wang
Identification of Key Genes for the Ultrahigh Yield of Rice Using Dynamic Cross-tissue Network Analysis. Genom. Proteom. Bioinform. 18 (3) (2020)
Jingsong Zhang, Jianmei Guo, Ming Zhang, Xiangtian Yu, Xiaoqing Yu, Weifeng Guo, Tao Zeng, Luonan Chen
Efficient Mining Multi-Mers in a Variety of Biological Sequences. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (3) (2020)
Shaoyan Sun, Xiangtian Yu, Fengnan Sun, Ying Tang, Juan Zhao, Tao Zeng
Dynamically characterizing individual clinical change by the steady state of disease-associated pathway. BMC Bioinform. (25) (2019)
Weifeng Guo, Shao-Wu Zhang, Tao Zeng, Yan Li, Jianxi Gao, Luonan Chen
A novel network control model for identifying personalized driver genes in cancer. PLoS Comput. Biol. 15 (11) (2019)
Lei Chen, Xiaoyong Pan, Tao Zeng, Yu-Hang Zhang, Tao Huang, Yu-Dong Cai
Identifying Essential Signature Genes and Expression Rules Associated With Distinctive Development Stages of Early Embryonic Cells. IEEE Access 7 (2019)
Weifeng Guo, Shao-Wu Zhang, Li-Li Liu, Fei Liu, Qianqian Shi, Lei Zhang, Ying Tang, Tao Zeng, Luonan Chen
Discovering personalized driver mutation profiles of single samples in cancer by network control strategy. Bioinform. 34 (11) (2018)
Shaoyan Sun, Xiangtian Yu, Fengnan Sun, Ying Tang, Juan Zhao, Tao Zeng
Characterizing and Discriminating Individual Steady State of Disease-Associated Pathway. ICIC (1) (2018)
Chuanchao Zhang, Juan Liu, Qianqian Shi, Tao Zeng, Luonan Chen
Differential function analysis: identifying structure and activation variations in dysregulated pathways. Sci. China Inf. Sci. 60 (1) (2017)
Chuanchao Zhang, Juan Liu, Qianqian Shi, Tao Zeng, Luonan Chen
Comparative network stratification analysis for identifying functional interpretable network biomarkers. BMC Bioinform. 18 (S-3) (2017)
Qianqian Shi, Chuanchao Zhang, Minrui Peng, Xiangtian Yu, Tao Zeng, Juan Liu, Luonan Chen
Pattern fusion analysis by adaptive alignment of multiple heterogeneous omics data. Bioinform. 33 (17) (2017)
Jingsong Zhang, Jianmei Guo, Xiaoqing Yu, Xiangtian Yu, Weifeng Guo, Tao Zeng, Luonan Chen
Mining K-mers of Various Lengths in Biological Sequences. ISBRA (2017)
Chuanchao Zhang, Juan Liu, Qianqian Shi, Xiangtian Yu, Tao Zeng, Luonan Chen
Integration of multiple heterogeneous omics data. BIBM (2016)
Tao Zeng, Wanwei Zhang, Xiangtian Yu, Xiaoping Liu, Meiyi Li, Luonan Chen
Big-data-based edge biomarkers: study on dynamical drug sensitivity and resistance in individuals. Briefings Bioinform. 17 (4) (2016)
Hao Kang, Kwang-Hyun Cho, Xiaohua Douglas Zhang, Tao Zeng, Luonan Chen
Inferring Sequential Order of Somatic Mutations during Tumorgenesis based on Markov Chain Model. IEEE ACM Trans. Comput. Biol. Bioinform. 12 (5) (2015)
Chuanchao Zhang, Juan Liu, Qianqian Shi, Tao Zeng, Luonan Chen
Identification of phenotypic networks based on whole transcriptome by comparative network decomposition. BIBM (2015)
Shuhua Chen, Juan Liu, Tao Zeng
MMSE: A generalized coherence measure for identifying linear patterns. BIBM (2014)
Tao Zeng, Xuan Guo, Juan Liu
Negative correlation based gene markers identification in integrative gene expression data. Int. J. Data Min. Bioinform. 10 (1) (2014)
Tao Zeng, Ziming Wang, Luonan Chen
Detecting Phosphorylation Determined Active Protein Interaction Network during Cancer Development by Robust Network Component Analysis. DTMBIO@CIKM (2014)
Meiyi Li, Tao Zeng, Rui Liu, Luonan Chen
Detecting tissue-specific early warning signals for complex diseases based on dynamical network biomarkers: study of type 2 diabetes by cross-tissue analysis. Briefings Bioinform. 15 (2) (2014)
Tao Zeng, Luonan Chen
Correction: Tracing dynamic biological processes during phase transition. BMC Syst. Biol. 6 (S-1) (2012)
Tao Zeng, Luonan Chen
Tracing dynamic biological processes during phase transition. BMC Syst. Biol. 6 (S-1) (2012)
Tao Zeng, Ruozhao Wang, Luonan Chen
Module network rewiring in response to therapy. ISB (2012)
Yi Xiong, Wen Zhang, Tao Zeng, Juan Liu
Prediction of Heme Binding Sites in Heme Proteins Using an Integrative Sequence Profile Coupling Evolutionary Information with Physicochemical Properties. BIBM (2011)
Tao Zeng, Juan Liu
Mixture classification model based on clinical markers for breast cancer prognosis. Artif. Intell. Medicine 48 (2-3) (2010)
Tao Zeng, Xuan Guo, Juan Liu
Discovering negative correlated gene sets from integrative gene expression data for cancer prognosis. BIBM (2010)
Tao Zeng, Fei Luo, Juan Liu
Biological Pathway Conducting Microarray-Based Cancer Classification. BMEI (2009)
Tao Zeng, Juan Liu
Analysis on Time-lagged Gene Clusters in Time Series Gene Expression Data. CIS (2007)