Sophie Barbe

Publication Activity (10 Years)

Years Active: 2008-2023
Publications (10 Years): 12

Top Topics

Fitness Landscape

Quality Guarantees

Top Venues

Publications

Marianne Defresne, Sophie Barbe, Thomas Schiex
Scalable Coupling of Deep Learning with Logical Reasoning. CoRR (2023)
Marianne Defresne, Sophie Barbe, Thomas Schiex
Scalable Coupling of Deep Learning with Logical Reasoning. IJCAI (2023)
Manon Ruffini, Jelena Vucinic, Simon de Givry, George Katsirelos, Sophie Barbe, Thomas Schiex
Guaranteed Diversity and Optimality in Cost Function Network Based Computational Protein Design Methods. Algorithms 14 (6) (2021)
Jelena Vucinic, David Simoncini, Manon Ruffini, Sophie Barbe, Thomas Schiex
Positive multistate protein design. Bioinform. 36 (1) (2020)
David Simoncini, Kam Y. J. Zhang, Thomas Schiex, Sophie Barbe
A structural homology approach for computational protein design with flexible backbone. Bioinform. 35 (14) (2019)
Antoine Charpentier, David Mignon, Sophie Barbe, Juan Cortés, Thomas Schiex, Thomas Simonson, David Allouche
Variable Neighborhood Search with Cost Function Networks To Solve Large Computational Protein Design Problems. J. Chem. Inf. Model. 59 (1) (2019)
Manon Ruffini, Jelena Vucinic, Simon de Givry, George Katsirelos, Sophie Barbe, Thomas Schiex
Guaranteed Diversity & Quality for the Weighted CSP. ICTAI (2019)
David Simoncini, Sophie Barbe, Thomas Schiex, Sébastien Vérel
Fitness landscape analysis around the optimum in computational protein design. GECCO (2018)
Clément Viricel, Simon de Givry, Thomas Schiex, Sophie Barbe
Cost function network-based design of protein-protein interactions: predicting changes in binding affinity. Bioinform. 34 (15) (2018)
Clément Viricel, David Simoncini, Sophie Barbe, Thomas Schiex
Guaranteed Weighted Counting for Affinity Computation: Beyond Determinism and Structure. CP (2016)
Seydou Traoré, Kyle E. Roberts, David Allouche, Bruce Randall Donald, Isabelle André, Thomas Schiex, Sophie Barbe
Fast search algorithms for computational protein design. J. Comput. Chem. 37 (12) (2016)
Clément Viricel, David Simoncini, David Allouche, Simon de Givry, Sophie Barbe, Thomas Schiex
Approximate Counting with Deterministic Guarantees for Affinity Computation. MCO (2) (2015)
David Allouche, Isabelle André, Sophie Barbe, Jessica Davies, Simon de Givry, George Katsirelos, Barry O'Sullivan, Steven D. Prestwich, Thomas Schiex, Seydou Traoré
Computational protein design as an optimization problem. Artif. Intell. 212 (2014)
Seydou Traoré, David Allouche, Isabelle André, Simon de Givry, George Katsirelos, Thomas Schiex, Sophie Barbe
A new framework for computational protein design through cost function network optimization. Bioinform. 29 (17) (2013)
David Allouche, Seydou Traoré, Isabelle André, Simon de Givry, George Katsirelos, Sophie Barbe, Thomas Schiex
Computational Protein Design as a Cost Function Network Optimization Problem. CP (2012)
Juan Cortés, Sophie Barbe, Monique Erard, Thierry Siméon
Encoding Molecular Motions in Voxel Maps. IEEE ACM Trans. Comput. Biol. Bioinform. 8 (2) (2011)
Juan Cortés, Sophie Barbe, Monique Erard, Thierry Siméon
Encoding molecular motions in voxel maps. ICRA (2009)
Sophie Barbe, Marc Le Bret
determination of the flexibility of 2'-aminoribonucleosides and 2'-aminoarabinonucleosides inserted in duplexes. J. Comput. Chem. 29 (9) (2008)