Richa Agarwala

Publication Activity (10 Years)

Years Active: 1992-2021
Publications (10 Years): 2

Top Topics

Domain Knowledge

Multiple Targets

Enormous Amounts

Top Venues

Nucleic Acids Res.

Publications

Alexandre Souvorov, Richa Agarwala
SAUTE: sequence assembly using target enrichment. BMC Bioinform. 22 (1) (2021)
Eric W. Sayers, Richa Agarwala, Evan Bolton, J. Rodney Brister, Kathi Canese, Karen Clark, Ryan Connor, Nicolas Fiorini, Kathryn Funk, Timothy Hefferon, J. Bradley Holmes, Sunghwan Kim, Avi Kimchi, Paul A. Kitts, Stacy Lathrop, Zhiyong Lu, Thomas L. Madden, Aron Marchler-Bauer, Lon Phan, Valerie A. Schneider, Conrad L. Schoch, Kim D. Pruitt, James Ostell
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 47 (Database-Issue) (2019)
Xusheng Wang, Richa Agarwala, John A. Capra, Zugen Chen, Deanna M. Church, Daniel C. Ciobanu, Zhengsheng Li, Lu Lu, Khyobeni Mozhui, Megan K. Mulligan, Stanley F. Nelson, Katherine S. Pollard, William Taylor, Donald B. Thomason, Robert W. Williams
High-throughput sequencing of the DBA/2J mouse genome. BMC Bioinform. 11 (S-4) (2010)
William Klimke, Richa Agarwala, Azat Badretdin, Slava Chetvernin, Stacy Ciufo, Boris Fedorov, Boris Kiryutin, Kathleen O'Neill, Wolfgang Resch, Sergei Resenchuk, Susan Schafer, Igor Tolstoy, Tatiana A. Tatusova
The National Center for Biotechnology Information's Protein Clusters Database. Nucleic Acids Res. 37 (Database-Issue) (2009)
Aleksandr Morgulis, George Coulouris, Yan Raytselis, Thomas L. Madden, Richa Agarwala, Alejandro A. Schäffer
Database indexing for production MegaBLAST searches. Bioinform. 24 (24) (2008)
Aleksandr Morgulis, George Coulouris, Yan Raytselis, Thomas L. Madden, Richa Agarwala, Alejandro A. Schäffer
Database indexing for production MegaBLAST searches. Bioinform. 24 (16) (2008)
Alejandro A. Schäffer, Edward Stallknecht Rice, William J. Cook, Richa Agarwala
rh_tsp_map 3.0: end-to-end radiation hybrid mapping with improved speed and quality control. Bioinform. 23 (9) (2007)
Jason S. Papadopoulos, Richa Agarwala
COBALT: constraint-based alignment tool for multiple protein sequences. Bioinform. 23 (9) (2007)
Sergey A. Shiryev, Jason S. Papadopoulos, Alejandro A. Schäffer, Richa Agarwala
Improved BLAST searches using longer words for protein seeding. Bioinform. 23 (21) (2007)
Aleksandr Morgulis, E. Michael Gertz, Alejandro A. Schäffer, Richa Agarwala
A Fast and Symmetric DUST Implementation to Mask Low-Complexity DNA Sequences. J. Comput. Biol. 13 (5) (2006)
Aleksandr Morgulis, E. Michael Gertz, Alejandro A. Schäffer, Richa Agarwala
WindowMasker: window-based masker for sequenced genomes. Bioinform. 22 (2) (2006)
Richa Agarwala, Leslie G. Biesecker, Alejandro A. Schäffer
Inverse inbreeding coefficient problems with an application to linkage analysis of recessive diseases in inbred populations. Discret. Appl. Math. 104 (1-3) (2000)
Richa Agarwala, Leslie G. Biesecker, Alejandro A. Schäffer
Inverse Inbreeding Coefficient Problems with an Application to Linkage Analysis of Recessive Diseases in Inbred Populations. SODA (1999)
Richa Agarwala, Vineet Bafna, Martin Farach, Mike Paterson, Mikkel Thorup
On the Approximability of Numerical Taxonomy (Fitting Distances by Tree Metrics). SIAM J. Comput. 28 (3) (1999)
Richa Agarwala, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Martin Farach, Sridhar Hannenhalli, S. Muthukrishnan, Steven Skiena
Local rules for protein folding on a triangular lattice and generalized hydrophobicity in the HP model. RECOMB (1997)
Richa Agarwala, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Martin Farach, Sridhar Hannenhalli, Steven Skiena
Local Rules for Protein Folding on a Triangular Lattice and Generalized Hydrophobicity in the HP Model. SODA (1997)
Richa Agarwala, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Sridhar Hannenhalli, Martin Farach, S. Muthukrishnan, Steven Skiena
Local Rules for Protein Folding on a Triangular Lattice and Generalized Hydrophobicity in the HP Model. J. Comput. Biol. 4 (3) (1997)
Richa Agarwala, Vineet Bafna, Martin Farach, Babu O. Narayanan, Mike Paterson, Mikkel Thorup
On the Approximability of Numerical Taxonomy (Fitting Distances by Tree Metrics). SODA (1996)
Richa Agarwala, David Fernández-Baca
Simple Algorithms for Perfect Phylogeny and Triangulating Colored Graphs. Int. J. Found. Comput. Sci. 7 (1) (1996)
Richa Agarwala, David Fernández-Baca
Weighted Multidimensional Search and Its Application to Convex Optimization. SIAM J. Comput. 25 (1) (1996)
Richa Agarwala, David Fernández-Baca, Giora Slutzki
Fast Algorithms for Inferring Evolutionary Trees. J. Comput. Biol. 2 (3) (1995)
Richa Agarwala, David Fernández-Baca
Weighted Search in the Plane. Inf. Process. Lett. 54 (2) (1995)
Richa Agarwala, David Fernández-Baca
A Polynomial-Time Algorithm for the Perfect Phylogeny Problem when the Number of Character States is Fixed. SIAM J. Comput. 23 (6) (1994)
Richa Agarwala, David Fernández-Baca
A Polynomial-Time Algorithm for the Perfect Phylogeny Problem when the Number of Character States is Fixed FOCS (1993)
Richa Agarwala, David Fernández-Baca
Solving the Lagrangian Dual when the Number of Constraints is Fixed. FSTTCS (1992)