A Polynomial-Time Algorithm for the Perfect Phylogeny Problem when the Number of Character States is Fixed

Richa Agarwala David Fernández-Baca

Published in: FOCS (1993)

Keyphrases

computational complexity
space complexity
learning algorithm
randomized algorithm
state variables
optimization algorithm
worst case

dynamic programming
memory requirements
expectation maximization
cost function
k means
np hard
query complexity

search space
optimal solution
objective function
particle swarm optimization
polynomial time complexity
constant factor
strongly polynomial

recognition algorithm
matching algorithm
detection algorithm
linear programming
simulated annealing
evolutionary algorithm
similarity measure