Remo Rohs

Publication Activity (10 Years)

Years Active: 2006-2022
Publications (10 Years): 7

Top Topics

Structural Analysis

Graph Embedding

Top Venues

Nucleic Acids Res.

Publications

Brendon H. Cooper, Tsu-Pei Chiu, Remo Rohs
Top-Down Crawl: a method for the ultra-rapid and motif-free alignment of sequences with associated binding metrics. Bioinform. 38 (22) (2022)
Jared M. Sagendorf, Nicholas Markarian, Helen M. Berman, Remo Rohs
DNAproDB: an expanded database and web-based tool for structural analysis of DNA?protein complexes. Nucleic Acids Res. 48 (Database-Issue) (2020)
Tsu-Pei Chiu, Beibei Xin, Nicholas Markarian, Yingfei Wang, Remo Rohs
TFBSshape: an expanded motif database for DNA shape features of transcription factor binding sites. Nucleic Acids Res. 48 (Database-Issue) (2020)
Chen Chu, Zhao Li, Beibei Xin, Fengchao Peng, Chuanren Liu, Remo Rohs, Qiong Luo, Jingren Zhou
Deep Graph Embedding for Ranking Optimization in E-commerce. CIKM (2018)
Jared M. Sagendorf, Helen M. Berman, Remo Rohs
DNAproDB: an interactive tool for structural analysis of DNA-protein complexes. Nucleic Acids Res. 45 (Webserver-Issue) (2017)
Wenxiu Ma, Lin Yang, Remo Rohs, William Stafford Noble
DNA sequence+shape kernel enables alignment-free modeling of transcription factor binding. Bioinform. 33 (19) (2017)
Tsu-Pei Chiu, Federico Comoglio, Tianyin Zhou, Lin Yang, Renato Paro, Remo Rohs
DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding. Bioinform. 32 (8) (2016)
Tsu-Pei Chiu, Lin Yang, Tianyin Zhou, Bradley J. Main, Stephen C. J. Parker, Sergey V. Nuzhdin, Thomas D. Tullius, Remo Rohs
GBshape: a genome browser database for DNA shape annotations. Nucleic Acids Res. 43 (Database-Issue) (2015)
Lin Yang, Tianyin Zhou, Iris Dror, Anthony Mathelier, Wyeth W. Wasserman, Raluca Gordân, Remo Rohs
NAR Breakthrough Article: TFBSshape: a motif database for DNA shape features of transcription factor binding sites. Nucleic Acids Res. 42 (Database-Issue) (2014)
Tianyin Zhou, Lin Yang, Yan Lu, Iris Dror, Ana Carolina Dantas Machado, Tahereh Ghane, Rosa Di Felice, Remo Rohs
DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale. Nucleic Acids Res. 41 (Webserver-Issue) (2013)
Heinz Sklenar, Daniel Wüstner, Remo Rohs
Using internal and collective variables in Monte Carlo simulations of nucleic acid structures: Chain breakage/closure algorithm and associated Jacobians. J. Comput. Chem. 27 (3) (2006)