DNA sequence+shape kernel enables alignment-free modeling of transcription factor binding.
Wenxiu MaLin YangRemo RohsWilliam Stafford NoblePublished in: Bioinform. (2017)
Keyphrases
- dna sequences
- transcription factors
- binding sites
- dna binding
- transcription factor binding sites
- component analysis
- chip seq
- motif discovery
- microarray
- sequence alignment
- gene expression
- genome wide
- human genome
- rna sequences
- regulatory networks
- regulatory elements
- computational biology
- gene regulation
- biological sequences
- sequence patterns
- highly correlated
- cell cycle
- machine learning
- systems biology
- genomic sequences
- biological processes
- high throughput
- gene structure prediction