DNA sequence+shape kernel enables alignment-free modeling of transcription factor binding.

Wenxiu Ma Lin Yang Remo Rohs William Stafford Noble

Published in: Bioinform. (2017)

Keyphrases

dna sequences
transcription factors
binding sites
dna binding
transcription factor binding sites
component analysis
chip seq

motif discovery
microarray
sequence alignment
gene expression
genome wide
human genome
rna sequences

regulatory networks
regulatory elements
computational biology
gene regulation
biological sequences
sequence patterns
highly correlated

cell cycle
machine learning
systems biology
genomic sequences
biological processes
high throughput
gene structure prediction