Mehmet Serkan Apaydin

Publication Activity (10 Years)

Years Active: 2001-2023
Publications (10 Years): 4

Top Topics

Protein Structure

Transfer Learning

Top Venues

ICIAP Workshops (2)

RAIRO Oper. Res.

Publications

Veli Mustafa Yönder, Emre Ipek, Tarik Çetin, Hasan Burak Çavka, Mehmet Serkan Apaydin, Fehmi Dogan
Classification of Turkish and Balkan House Architectures Using Transfer Learning and Deep Learning. ICIAP Workshops (2) (2023)
Umut Can Çakmak, Bülent Çatay, Mehmet Serkan Apaydin
A neural network approach for predicting speeds on road networks. SIU (2018)
Umut Can Çakmak, Mehmet Serkan Apaydin, Bülent Çatay
Traffic Speed Prediction with Neural Networks. OR (2017)
SeymaÇetnIkaya, Seyma Nur Ekren, Mehmet Serkan Apaydin
Progress in Nuclear Vector Replacement for NMR Protein Structure-Based Assignments. RAIRO Oper. Res. 50 (2) (2016)
Murodzhon Akhmedov, Bülent Çatay, Mehmet Serkan Apaydin
Automating unambiguous NOE data usage in NVR for NMR protein structure-based assignments. J. Bioinform. Comput. Biol. 13 (6) (2015)
Seyma Nur Ekren, Mehmet Serkan Apaydin
Incorporating triple resonance experiment data into NVR for NMR protein structure-based assignments. SIU (2014)
Murodzhon Akhmedov, Bülent Çatay, Mehmet Serkan Apaydin
Distinguishing the type of NOE for NMR protein Structure-Based Assignments. SIU (2013)
Jeyhun Aslanov, Bülent Çatay, Mehmet Serkan Apaydin
An ant colony optimization approach for solving the nuclear magnetic resonance structure based assignment problem. GECCO (Companion) (2013)
Gizem Çavuslar, Bülent Çatay, Mehmet Serkan Apaydin
A Tabu Search Approach for the NMR Protein Structure-Based Assignment Problem. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (6) (2012)
Mehmet Serkan Apaydin, Bülent Çatay, Nicholas Patrick, Bruce Randall Donald
NVR-BIP: Nuclear Vector Replacement using Binary Integer Programming for NMR Structure-Based Assignments. Comput. J. 54 (5) (2011)
Mehmet Çagri Çalpur, Hakan Erdogan, Bülent Çatay, Bruce Randall Donald, Mehmet Serkan Apaydin
Developing a Scoring Function for NMR Structure-based Assignments using Machine Learning. ISCIS (2010)
Mehmet Serkan Apaydin, Bülent Çatay, Nicholas Patrick, Bruce Randall Donald
NVR-BIP: Nuclear vector replacement using binary integer programming for NMR structure-based assignments. ISCIS (2009)
Tsung-Han Chiang, Mehmet Serkan Apaydin, Douglas L. Brutlag, David Hsu, Jean-Claude Latombe
Using Stochastic Roadmap Simulation to Predict Experimental Quantities in Protein Folding Kinetics: Folding Rates and Phi-Values. J. Comput. Biol. 14 (5) (2007)
Tsung-Han Chiang, Mehmet Serkan Apaydin, Douglas L. Brutlag, David Hsu, Jean-Claude Latombe
Predicting Experimental Quantities in Protein Folding Kinetics Using Stochastic Roadmap Simulation. RECOMB (2006)
Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe, Chris Varma
Stochastic Roadmap Simulation: An Efficient Representation and Algorithm for Analyzing Molecular Motion. J. Comput. Biol. 10 (3/4) (2003)
Douglas L. Brutlag, Mehmet Serkan Apaydin, Carlos Guestrin, David Hsu, Chris Varma, Amit Pal Singh, Jean-Claude Latombe
Using robotics to fold proteins and dock ligands. ECCB (2002)
Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe
Stochastic roadmap simulation: an efficient representation and algorithm for analyzing molecular motion. RECOMB (2002)
Mehmet Serkan Apaydin, Douglas L. Brutlag, Carlos Guestrin, David Hsu, Jean-Claude Latombe
Stochastic Conformational Roadmaps for Computing Ensemble Properties of Molecular Motion. WAFR (2002)
Mehmet Serkan Apaydin, Carlos Guestrin, Chris Varma, Douglas L. Brutlag, Jean-Claude Latombe
Stochastic roadmap simulation for the study of ligand-protein interactions. ECCB (2002)
Richard Beigel, Noga Alon, Simon Kasif, Mehmet Serkan Apaydin, Lance Fortnow
An optimal procedure for gap closing in whole genome shotgun sequencing. RECOMB (2001)
Mehmet Serkan Apaydin, Amit Pal Singh, Douglas L. Brutlag, Jean-Claude Latombe
Capturing Molecular Energy Landscapes with Probabilistic Conformational Roadmaps. ICRA (2001)