Justin Chu

Publication Activity (10 Years)

Years Active: 2014-2022
Publications (10 Years): 17

Top Topics

Top Venues

Publications

Vladimir Nikolic, Amirhossein Afshinfard, Justin Chu, Johnathan Wong, Lauren Coombe, Ka Ming Nip, René L. Warren, Inanç Birol
RResolver: efficient short-read repeat resolution within ABySS. BMC Bioinform. 23 (1) (2022)
Vladimir Nikolic, Parham Kazemi, Lauren Coombe, Johnathan Wong, Amirhossein Afshinfard, Justin Chu, René L. Warren, Inanç Birol
btllib: A C++ library with Python interface for efficient genomic sequence processing. J. Open Source Softw. 7 (79) (2022)
Justin Chu, Tingting Yu, Jane Huffman Hayes, Xue Han, Yu Zhao
Effective fault localization and context-aware debugging for concurrent programs. Softw. Test. Verification Reliab. 32 (1) (2022)
Justin Chu, Wen-Tse Yang, Wei-Ru Lu, Yao-Ting Chang, Tung-Han Hsieh, Fu-Liang Yang
90% Accuracy for Photoplethysmography-Based Non-Invasive Blood Glucose Prediction by Deep Learning with Cohort Arrangement and Quarterly Measured HbA1c. Sensors 21 (23) (2021)
Eric Chen, Justin Chu, Jessica Zhang, René L. Warren, Inanç Birol
GapPredict - A Language Model for Resolving Gaps in Draft Genome Assemblies. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (6) (2021)
Eric Chen, Justin Chu, Jessica Zhang, René L. Warren, Inanç Birol
GapPredict: A Language Model for Resolving Gaps in Draft Genome Assemblies. CoRR (2021)
Lauren Coombe, Vladimir Nikolic, Justin Chu, Inanç Birol, René L. Warren
ntJoin: Fast and lightweight assembly-guided scaffolding using minimizer graphs. Bioinform. 36 (12) (2020)
Justin Chu, Hamid Mohamadi, Emre Erhan, Jeffery Tse, Readman Chiu, Sarah Yeo, Inanç Birol
Mismatch-tolerant, alignment-free sequence classification using multiple spaced seeds and multiindex Bloom filters. Proc. Natl. Acad. Sci. USA 117 (29) (2020)
Shaun D. Jackman, Lauren Coombe, Justin Chu, René L. Warren, Benjamin P. Vandervalk, Sarah Yeo, Zhuyi Xue, Hamid Mohamadi, Jörg Bohlmann, Steven J. M. Jones, Inanç Birol
Tigmint: correcting assembly errors using linked reads from large molecules. BMC Bioinform. 19 (1) (2018)
Inanç Birol, Hamid Mohamadi, Justin Chu
ntPack: A Software Package for Big Data in Genomics. BDCAT (2018)
Lauren Coombe, Jessica Zhang, Benjamin P. Vandervalk, Justin Chu, Shaun D. Jackman, Inanç Birol, René L. Warren
ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers. BMC Bioinform. 19 (1) (2018)
Hamza Khan, Hamid Mohamadi, Benjamin P. Vandervalk, René L. Warren, Justin Chu, Inanç Birol
ChopStitch: exon annotation and splice graph construction using transcriptome assembly and whole genome sequencing data. Bioinform. 34 (10) (2018)
Sarah Yeo, Lauren Coombe, René L. Warren, Justin Chu, Inanç Birol
ARCS: scaffolding genome drafts with linked reads. Bioinform. 34 (5) (2018)
Erdi Kucuk, Justin Chu, Benjamin P. Vandervalk, S. Austin Hammond, René L. Warren, Inanç Birol
Kollector: transcript-informed, targeted de novo assembly of gene loci. Bioinform. 33 (12) (2017)
Justin Chu, Hamid Mohamadi, René L. Warren, Chen Yang, Inanç Birol
Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art. Bioinform. 33 (8) (2017)
Erdi Kucuk, Justin Chu, Benjamin P. Vandervalk, S. Austin Hammond, René L. Warren, Inanç Birol
Kollector: transcript-informed, targeted de novo assembly of gene loci. Bioinform. 33 (17) (2017)
Hamid Mohamadi, Justin Chu, Benjamin P. Vandervalk, Inanç Birol
ntHash: recursive nucleotide hashing. Bioinform. 32 (22) (2016)
Justin Chu, Sara Sadeghi, Anthony Raymond, Shaun D. Jackman, Ka Ming Nip, Richard Mar, Hamid Mohamadi, Yaron S. N. Butterfield, A. Gordon Robertson, Inanç Birol
BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters. Bioinform. 30 (23) (2014)
Inanç Birol, Hamid Mohamadi, Anthony Raymond, Karthika Raghavan, Justin Chu, Benjamin P. Vandervalk, Shaun D. Jackman, René L. Warren
Spaced seed data structures. BIBM (2014)
Benjamin P. Vandervalk, Shaun D. Jackman, Anthony Raymond, Hamid Mohamadi, Chen Yang, Dean A. Attali, Justin Chu, René L. Warren, Inanç Birol
Konnector: Connecting paired-end reads using a bloom filter de Bruijn graph. BIBM (2014)