Hamid Mohamadi

Publication Activity (10 Years)

Years Active: 2008-2022
Publications (10 Years): 9

Top Topics

Top Venues

Publications

Parham Kazemi, Johnathan Wong, Vladimir Nikolic, Hamid Mohamadi, René L. Warren, Inanç Birol
ntHash2: recursive spaced seed hashing for nucleotide sequences. Bioinform. 38 (20) (2022)
Justin Chu, Hamid Mohamadi, Emre Erhan, Jeffery Tse, Readman Chiu, Sarah Yeo, Inanç Birol
Mismatch-tolerant, alignment-free sequence classification using multiple spaced seeds and multiindex Bloom filters. Proc. Natl. Acad. Sci. USA 117 (29) (2020)
René L. Warren, Lauren Coombe, Hamid Mohamadi, Jessica Zhang, Barry Jaquish, Nathalie Isabel, Steven J. M. Jones, Jean Bousquet, Jörg Bohlmann, Inanç Birol
ntEdit: scalable genome sequence polishing. Bioinform. 35 (21) (2019)
Shaun D. Jackman, Lauren Coombe, Justin Chu, René L. Warren, Benjamin P. Vandervalk, Sarah Yeo, Zhuyi Xue, Hamid Mohamadi, Jörg Bohlmann, Steven J. M. Jones, Inanç Birol
Tigmint: correcting assembly errors using linked reads from large molecules. BMC Bioinform. 19 (1) (2018)
Inanç Birol, Hamid Mohamadi, Justin Chu
ntPack: A Software Package for Big Data in Genomics. BDCAT (2018)
Hamza Khan, Hamid Mohamadi, Benjamin P. Vandervalk, René L. Warren, Justin Chu, Inanç Birol
ChopStitch: exon annotation and splice graph construction using transcriptome assembly and whole genome sequencing data. Bioinform. 34 (10) (2018)
Hamid Mohamadi, Hamza Khan, Inanç Birol
ntCard: a streaming algorithm for cardinality estimation in genomics data. Bioinform. 33 (9) (2017)
Justin Chu, Hamid Mohamadi, René L. Warren, Chen Yang, Inanç Birol
Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art. Bioinform. 33 (8) (2017)
Hamid Mohamadi, Justin Chu, Benjamin P. Vandervalk, Inanç Birol
ntHash: recursive nucleotide hashing. Bioinform. 32 (22) (2016)
Justin Chu, Sara Sadeghi, Anthony Raymond, Shaun D. Jackman, Ka Ming Nip, Richard Mar, Hamid Mohamadi, Yaron S. N. Butterfield, A. Gordon Robertson, Inanç Birol
BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters. Bioinform. 30 (23) (2014)
Inanç Birol, Hamid Mohamadi, Anthony Raymond, Karthika Raghavan, Justin Chu, Benjamin P. Vandervalk, Shaun D. Jackman, René L. Warren
Spaced seed data structures. BIBM (2014)
Benjamin P. Vandervalk, Shaun D. Jackman, Anthony Raymond, Hamid Mohamadi, Chen Yang, Dean A. Attali, Justin Chu, René L. Warren, Inanç Birol
Konnector: Connecting paired-end reads using a bloom filter de Bruijn graph. BIBM (2014)
Lucian Ilie, Hamid Mohamadi, Geoffrey Brian Golding, William F. Smyth
BOND: Basic OligoNucleotide Design. BMC Bioinform. 14 (2013)
Mohammad Saniee Abadeh, Hamid Mohamadi, Jafar Habibi
Design and analysis of genetic fuzzy systems for intrusion detection in computer networks. Expert Syst. Appl. 38 (6) (2011)
Maziyar Baran Pouyan, Hamid Mohamadi, Mohammad Saniee Abadeh, Ali Foroughifar
A Novel Fuzzy Genetic Annealing Classification Approach. EMS (2009)
Hamid Mohamadi, Jafar Habibi, Shahrouz Moaven
Knowledge Discovery Using a New Interpretable Simulated Annealing Based Fuzzy Classification System. ACIIDS (2009)
Hamid Mohamadi, Jafar Habibi, Mohammad Saniee Abadeh, Hamid Saadi
Data mining with a simulated annealing based fuzzy classification system. Pattern Recognit. 41 (5) (2008)
Hamid Mohamadi, Jafar Habibi, Mohammad Saniee Abadeh
Misuse Intrusion Detection Using a Fuzzy-Metaheuristic Approach. Asia International Conference on Modelling and Simulation (2008)