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Mismatch-tolerant, alignment-free sequence classification using multiple spaced seeds and multiindex Bloom filters.

Justin ChuHamid MohamadiEmre ErhanJeffery TseReadman ChiuSarah YeoInanç Birol
Published in: Proc. Natl. Acad. Sci. USA (2020)
Keyphrases
  • sequence classification
  • bloom filter
  • sequence data
  • hidden markov models
  • markov models
  • sequence alignment
  • machine learning
  • data structure
  • conditional random fields