Lauren Coombe

Publication Activity (10 Years)

Years Active: 2018-2022
Publications (10 Years): 8

Top Topics

Cognitive Apprenticeship

High Throughput Sequencing

Top Venues

J. Open Source Softw.

Publications

Vladimir Nikolic, Amirhossein Afshinfard, Justin Chu, Johnathan Wong, Lauren Coombe, Ka Ming Nip, René L. Warren, Inanç Birol
RResolver: efficient short-read repeat resolution within ABySS. BMC Bioinform. 23 (1) (2022)
Vladimir Nikolic, Parham Kazemi, Lauren Coombe, Johnathan Wong, Amirhossein Afshinfard, Justin Chu, René L. Warren, Inanç Birol
btllib: A C++ library with Python interface for efficient genomic sequence processing. J. Open Source Softw. 7 (79) (2022)
Lauren Coombe, Janet X. Li, Theodora Lo, Johnathan Wong, Vladimir Nikolic, René L. Warren, Inanç Birol
LongStitch: high-quality genome assembly correction and scaffolding using long reads. BMC Bioinform. 22 (3) (2021)
Lauren Coombe, Vladimir Nikolic, Justin Chu, Inanç Birol, René L. Warren
ntJoin: Fast and lightweight assembly-guided scaffolding using minimizer graphs. Bioinform. 36 (12) (2020)
René L. Warren, Lauren Coombe, Hamid Mohamadi, Jessica Zhang, Barry Jaquish, Nathalie Isabel, Steven J. M. Jones, Jean Bousquet, Jörg Bohlmann, Inanç Birol
ntEdit: scalable genome sequence polishing. Bioinform. 35 (21) (2019)
Shaun D. Jackman, Lauren Coombe, Justin Chu, René L. Warren, Benjamin P. Vandervalk, Sarah Yeo, Zhuyi Xue, Hamid Mohamadi, Jörg Bohlmann, Steven J. M. Jones, Inanç Birol
Tigmint: correcting assembly errors using linked reads from large molecules. BMC Bioinform. 19 (1) (2018)
Lauren Coombe, Jessica Zhang, Benjamin P. Vandervalk, Justin Chu, Shaun D. Jackman, Inanç Birol, René L. Warren
ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers. BMC Bioinform. 19 (1) (2018)
Sarah Yeo, Lauren Coombe, René L. Warren, Justin Chu, Inanç Birol
ARCS: scaffolding genome drafts with linked reads. Bioinform. 34 (5) (2018)