Jorge González-Domínguez

Publication Activity (10 Years)

Years Active: 2009-2024
Publications (10 Years): 41

Top Topics

Feature Selection

Interaction Analysis

Similarity Matrices

Heterogeneous Systems

Top Venues

Future Gener. Comput. Syst.

J. Supercomput.

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Roberto R. Expósito, Jorge González-Domínguez
BigDEC: A multi-algorithm Big Data tool based on the k-mer spectrum method for scalable short-read error correction. Future Gener. Comput. Syst. 154 (2024)
Alejandro Fernández-Fraga, Jorge González-Domínguez, María J. Martín
Applying dynamic balancing to improve the performance of MPI parallel genomics applications. SAC (2024)
Bieito Beceiro, Jorge González-Domínguez, Laura Morán-Fernández, Verónica Bolón-Canedo, Juan Touriño
CUDA acceleration of MI-based feature selection methods. J. Parallel Distributed Comput. 190 (2024)
Alejandro Fernández-Fraga, Jorge González-Domínguez, María J. Martín
PARamrfinder: detecting allele-specific DNA methylation on multicore clusters. J. Supercomput. 80 (10) (2024)
Aurelio López-Fernández, Francisco Antonio Gómez Vela, Jorge González-Domínguez, Parameshachari Bidare Divakarachari
bioScience: A new python science library for high-performance computing bioinformatics analytics. SoftwareX 26 (2024)
Iñaki Amatria-Barral, Jorge González-Domínguez, Juan Touriño
PATO: genome-wide prediction of lncRNA-DNA triple helices. Bioinform. 39 (3) (2023)
Iñaki Amatria-Barral, Jorge González-Domínguez, Juan Touriño
pRIblast: A highly efficient parallel application for comprehensive lncRNA-RNA interaction prediction. Future Gener. Comput. Syst. 138 (2023)
Alejandro Fernández-Fraga, Jorge González-Domínguez, Juan Touriño
ParRADMeth: Identification of Differentially Methylated Regions on Multicore Clusters. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (3) (2023)
Iñaki Amatria-Barral, Jorge González-Domínguez, Juan Touriño
Parallel construction of RNA databases for extensive lncRNA-RNA interaction prediction. SAC (2023)
Christian Ponte-Fernández, Jorge González-Domínguez, María J. Martín
A SIMD algorithm for the detection of epistatic interactions of any order. CoRR (2022)
Borja González-Seoane, Christian Ponte-Fernández, Jorge González-Domínguez, María J. Martín
PyToxo: a Python tool for calculating penetrance tables of high-order epistasis models. BMC Bioinform. 23 (1) (2022)
Borja González-Seoane, Christian Ponte-Fernández, Jorge González-Domínguez, María J. Martín
Generating penetrance tables of high-order epistasis models with PyToxo. XoveTIC (2022)
Christian Ponte-Fernández, Jorge González-Domínguez, Antonio Carvajal-Rodríguez, María J. Martín
Evaluation of Existing Methods for High-Order Epistasis Detection. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (2) (2022)
Christian Ponte-Fernández, Jorge González-Domínguez, María J. Martín
Fiuncho: a program for any-order epistasis detection in CPU clusters. J. Supercomput. 78 (13) (2022)
Jorge González-Domínguez, José M. Martín-Martínez, Roberto R. Expósito
MPI-dot2dot: A parallel tool to find DNA tandem repeats on multicore clusters. J. Supercomput. 78 (3) (2022)
Bieito Beceiro, Jorge González-Domínguez, Juan Touriño
Parallel-FST: A feature selection library for multicore clusters. J. Parallel Distributed Comput. 169 (2022)
Christian Ponte-Fernández, Jorge González-Domínguez, María J. Martín
Fiuncho: a program for any-order epistasis detection in CPU clusters. CoRR (2022)
Christian Ponte-Fernández, Jorge González-Domínguez, María J. Martín
A SIMD algorithm for the detection of epistatic interactions of any order. Future Gener. Comput. Syst. 132 (2022)
Basilio B. Fraguela, Diego Andrade, Jorge González-Domínguez
ScalaParBiBit: scaling the binary biclustering in distributed-memory systems. Clust. Comput. 24 (3) (2021)
Jorge González-Domínguez, Roberto R. Expósito, Verónica Bolón-Canedo
CUDA-JMI: Acceleration of feature selection on heterogeneous systems. Future Gener. Comput. Syst. 102 (2020)
Christian Ponte-Fernández, Jorge González-Domínguez, Antonio Carvajal-Rodríguez, María J. Martín
Toxo: a library for calculating penetrance tables of high-order epistasis models. BMC Bioinform. 21 (1) (2020)
Roberto R. Expósito, Jorge González-Domínguez, Juan Touriño
SMusket: Spark-based DNA error correction on distributed-memory systems. Future Gener. Comput. Syst. 111 (2020)
Christian Ponte-Fernández, Jorge González-Domínguez, María J. Martín
Fast search of third-order epistatic interactions on CPU and GPU clusters. Int. J. High Perform. Comput. Appl. 34 (1) (2020)
Roberto R. Expósito, Roi Galego-Torreiro, Jorge González-Domínguez
SeQual: Big Data Tool to Perform Quality Control and Data Preprocessing of Large NGS Datasets. IEEE Access 8 (2020)
Jorge González-Domínguez, Roberto R. Expósito
Accelerating binary biclustering on platforms with CUDA-enabled GPUs. Inf. Sci. 496 (2019)
Jorge González-Domínguez, Verónica Bolón-Canedo, Borja Freire, Juan Touriño
Parallel feature selection for distributed-memory clusters. Inf. Sci. 496 (2019)
Uxía Casal, Jorge González-Domínguez, María J. Martín
Analysis of the Construction of Similarity Matrices on Multi-core and Many-Core Platforms Using Different Similarity Metrics. ICCS (1) (2019)
Jorge González-Domínguez, Christian Hundt, Bertil Schmidt
parSRA: A framework for the parallel execution of short read aligners on compute clusters. J. Comput. Sci. 25 (2018)
Jorge González-Domínguez, María J. Martín
MPIGeneNet: Parallel Calculation of Gene Co-Expression Networks on Multicore Clusters. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (5) (2018)
Christian Ponte-Fernández, Jorge González-Domínguez, María J. Martín
Evaluation of OpenMP SIMD Directives on Xeon Phi Coprocessors. HPCS (2017)
Roberto R. Expósito, Jorge Veiga, Jorge González-Domínguez, Juan Touriño
MarDRe: efficient MapReduce-based removal of duplicate DNA reads in the cloud. Bioinform. 33 (17) (2017)
Daniel Jünger, Christian Hundt, Jorge González-Domínguez, Bertil Schmidt
Speed and accuracy improvement of higher-order epistasis detection on CUDA-enabled GPUs. Clust. Comput. 20 (3) (2017)
Jorge González-Domínguez, Beatriz Remeseiro, María J. Martín
Parallel definition of tear film maps on distributed-memory clusters for the support of dry eye diagnosis. Comput. Methods Programs Biomed. 139 (2017)
Jorge González-Domínguez, María J. Martín
Fast Parallel Construction of Correlation Similarity Matrices for Gene Co-Expression Networks on Multicore Clusters. ICCS (2017)
Jorge González-Domínguez, Yongchao Liu, Juan Touriño, Bertil Schmidt
MSAProbs-MPI: parallel multiple sequence aligner for distributed-memory systems. Bioinform. 32 (24) (2016)
Jorge González-Domínguez, Bertil Schmidt
ParDRe: faster parallel duplicated reads removal tool for sequencing studies. Bioinform. 32 (10) (2016)
Carlos Eiras-Franco, Verónica Bolón-Canedo, Sabela Ramos, Jorge González-Domínguez, Amparo Alonso-Betanzos, Juan Touriño
Multithreaded and Spark parallelization of feature selection filters. J. Comput. Sci. 17 (2016)
Jorge González-Domínguez, Beatriz Remeseiro, María J. Martín
Acceleration of Tear Film Map Definition on Multicore Systems. ICCS (2016)
Daniel Jünger, Christian Hundt, Jorge González-Domínguez, Bertil Schmidt
Ultra-Fast Detection of Higher-Order Epistatic Interactions on GPUs. Euro-Par Workshops (2016)
Jorge González-Domínguez, Sabela Ramos, Juan Touriño, Bertil Schmidt
Parallel Pairwise Epistasis Detection on Heterogeneous Computing Architectures. IEEE Trans. Parallel Distributed Syst. 27 (8) (2016)
Jan Christian Kässens, Lars Wienbrandt, Manfred Schimmler, Jorge González-Domínguez, Bertil Schmidt
Combining GPU and FPGA technology for efficient exhaustive interaction analysis in GWAS. ASAP (2016)
Jorge González-Domínguez, Bertil Schmidt
GPU-accelerated exhaustive search for third-order epistatic interactions in case-control studies. J. Comput. Sci. 8 (2015)
Jan Christian Kässens, Lars Wienbrandt, Jorge González-Domínguez, Bertil Schmidt, Manfred Schimmler
High-speed exhaustive 3-locus interaction epistasis analysis on FPGAs. J. Comput. Sci. 9 (2015)
Jorge González-Domínguez, Lars Wienbrandt, Jan Christian Kässens, David Ellinghaus, Manfred Schimmler, Bertil Schmidt
Parallelizing Epistasis Detection in GWAS on FPGA and GPU-Accelerated Computing Systems. IEEE ACM Trans. Comput. Biol. Bioinform. 12 (5) (2015)
Jorge González-Domínguez, Jan Christian Kässens, Lars Wienbrandt, Bertil Schmidt
Large-scale genome-wide association studies on a GPU cluster using a CUDA-accelerated PGAS programming model. Int. J. High Perform. Comput. Appl. 29 (4) (2015)
Jorge González-Domínguez, Evangelos Georganas, Yili Zheng, María J. Martín
Constructing Performance Models for Dense Linear Algebra Algorithms on Cray XE Systems. CoRR (2014)
Jorge González-Domínguez, Osni A. Marques, María J. Martín, Juan Touriño
A 2D algorithm with asymmetric workload for the UPC conjugate gradient method. J. Supercomput. 70 (2) (2014)
Damián A. Mallón, Guillermo L. Taboada, Carlos Teijeiro, Jorge González-Domínguez, Andrés Gómez, Brian Wibecan
Scalable PGAS collective operations in NUMA clusters. Clust. Comput. 17 (4) (2014)
Jan Christian Kässens, Jorge González-Domínguez, Lars Wienbrandt, Bertil Schmidt
UPC++ for bioinformatics: A case study using genome-wide association studies. CLUSTER (2014)
Jorge González-Domínguez, Bertil Schmidt, Jan Christian Kässens, Lars Wienbrandt
Hybrid CPU/GPU Acceleration of Detection of 2-SNP Epistatic Interactions in GWAS. Euro-Par (2014)
Sandra Catalán, Jorge González-Domínguez, Rafael Mayo, Enrique S. Quintana-Ortí
Analyzing the Energy Efficiency of the Memory Subsystem in Multicore Processors. ISPA (2014)
Lars Wienbrandt, Jan Christian Kässens, Jorge González-Domínguez, Bertil Schmidt, David Ellinghaus, Manfred Schimmler
FPGA-based Acceleration of Detecting Statistical Epistasis in GWAS. ICCS (2014)
Jorge González-Domínguez, Óscar García-López, Guillermo L. Taboada, María J. Martín, Juan Touriño
Performance evaluation of sparse matrix products in UPC. J. Supercomput. 64 (1) (2013)
Jorge González-Domínguez, María J. Martín, Guillermo L. Taboada, Roberto R. Expósito, Juan Touriño
The Servet 3.0 benchmark suite: Characterization of network performance degradation. Comput. Electr. Eng. 39 (8) (2013)
Roberto R. Expósito, Guillermo L. Taboada, Sabela Ramos, Jorge González-Domínguez, Juan Touriño, Ramon Doallo
Analysis of I/O Performance on an Amazon EC2 Cluster Compute and High I/O Platform. J. Grid Comput. 11 (4) (2013)
Jorge González-Domínguez, Osni A. Marques, María J. Martín, Guillermo L. Taboada, Juan Touriño
Design and Performance Issues of Cholesky and LU Solvers Using UPCBLAS. ISPA (2012)
Jorge González-Domínguez, Guillermo L. Taboada, Basilio B. Fraguela, María J. Martín, Juan Touriño
Automatic mapping of parallel applications on multicore architectures using the Servet benchmark suite. Comput. Electr. Eng. 38 (2) (2012)
Evangelos Georganas, Jorge González-Domínguez, Edgar Solomonik, Yili Zheng, Juan Touriño, Katherine A. Yelick
Communication avoiding and overlapping for numerical linear algebra. SC (2012)
Jorge González-Domínguez, María J. Martín, Guillermo L. Taboada, Juan Touriño, Ramon Doallo, Damián A. Mallón, Brian Wibecan
UPCBLAS: a library for parallel matrix computations in Unified Parallel C. Concurr. Comput. Pract. Exp. 24 (14) (2012)
Jorge González-Domínguez, María J. Martín, Guillermo L. Taboada, Juan Touriño
Dense Triangular Solvers on Multicore Clusters using UPC. ICCS (2011)
Jorge González-Domínguez, Guillermo L. Taboada, Basilio B. Fraguela, María J. Martín, Juan Touriño
Servet: A benchmark suite for autotuning on multicore clusters. IPDPS (2010)
Jorge González-Domínguez, María J. Martín, Guillermo L. Taboada, Juan Touriño, Ramon Doallo, Andrés Gómez
A Parallel Numerical Library for UPC. Euro-Par (2009)