Jakob Ruess

Publication Activity (10 Years)

Years Active: 2013-2022
Publications (10 Years): 7

Top Topics

Experimental Designs

Chemical Reaction

Stochastic Simulation

Top Venues

PLoS Comput. Biol.

Publications

Andela Davidovic, Remy Chait, Grégory Batt, Jakob Ruess
Parameter inference for stochastic biochemical models from perturbation experiments parallelised at the single cell level. PLoS Comput. Biol. 18 (3) (2022)
Davin Lunz, Grégory Batt, Jakob Ruess, J. Frédéric Bonnans
Beyond the chemical master equation: Stochastic chemical kinetics coupled with auxiliary processes. PLoS Comput. Biol. 17 (7) (2021)
Maxim Kryukov, Arthur Carcano, Grégory Batt, Jakob Ruess
Can optimal experimental design serve as a tool to characterize highly non-linear synthetic circuits? ECC (2019)
Élise Weill, Virgile Andréani, Chetan Aditya, Pierre Martinon, Jakob Ruess, Grégory Batt, J. Frédéric Bonnans
Optimal control of an artificial microbial differentiation system for protein bioproduction. ECC (2019)
Sarah Anhala Cepeda-Humerez, Jakob Ruess, Gasper Tkacik
Estimating information in time-varying signals. PLoS Comput. Biol. 15 (9) (2019)
Jakob Ruess, Maros Pleska, Calin C. Guet, Gasper Tkacik
Molecular noise of innate immunity shapes bacteria-phage ecologies. PLoS Comput. Biol. 15 (7) (2019)
Christian Schilling, Sergiy Bogomolov, Thomas A. Henzinger, Andreas Podelski, Jakob Ruess
Adaptive moment closure for parameter inference of biochemical reaction networks. Biosyst. 149 (2016)
Jakob Ruess, John Lygeros
Moment-Based Methods for Parameter Inference and Experiment Design for Stochastic Biochemical Reaction Networks. ACM Trans. Model. Comput. Simul. 25 (2) (2015)
Sergiy Bogomolov, Thomas A. Henzinger, Andreas Podelski, Jakob Ruess, Christian Schilling
Adaptive Moment Closure for Parameter Inference of Biochemical Reaction Networks. CMSB (2015)
Francesca Parise, Jakob Ruess, John Lygeros
Grey-box techniques for the identification of a controlled gene expression model. ECC (2014)
Aron Hjartarson, Jakob Ruess, John Lygeros
Approximating the solution of the chemical master equation by combining finite state projection and stochastic simulation. CDC (2013)
Jakob Ruess, John Lygeros
On the Use of the Moment Equations for Parameter Inference, Control and Experimental Design in Stochastic Biochemical Reaction Networks. CMSB (2013)
Jakob Ruess, John Lygeros
Identifying stochastic biochemical networks from single-cell population experiments: A comparison of approaches based on the Fisher information. CDC (2013)