Ibrahim Burak Özyurt

Publication Activity (10 Years)

Years Active: 1998-2021
Publications (10 Years): 12

Top Topics

Biomedical Data

Cerebral Blood Flow

Top Venues

Database J. Biol. Databases Curation

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Chun-Nan Hsu, Chia-Hui Chang, Thamolwan Poopradubsil, Amanda Lo, Karen A. William, Ko-Wei Lin, Anita E. Bandrowski, Ibrahim Burak Özyurt, Jeffrey S. Grethe, Maryann E. Martone
Antibody Watch: Text mining antibody specificity from the literature. PLoS Comput. Biol. 17 (5) (2021)
Ibrahim Burak Özyurt
End-to-end Biomedical Question Answering via Bio-AnswerFinder and Discriminative Language Representation Models. CLEF (Working Notes) (2021)
Ibrahim Burak Özyurt, Anita E. Bandrowski, Jeffrey S. Grethe
Bio-AnswerFinder: a system to find answers to questions from biomedical texts. Database J. Biol. Databases Curation 2020 (2020)
Ibrahim Burak Özyurt
On the effectiveness of small, discriminatively pre-trained language representation models for biomedical text mining. SDP@EMNLP (2020)
Chun-Nan Hsu, Anita E. Bandrowski, Tom Gillespie, Jon Udell, Ko-Wei Lin, Ibrahim Burak Özyurt, Jeffrey S. Grethe, Maryann E. Martone
Comparing the Use of Research Resource Identifiers and Natural Language Processing for Citation of Databases, Software, and Other Digital Artifacts. Comput. Sci. Eng. 22 (2) (2020)
Chun-Nan Hsu, Chia-Hui Chang, Thamolwan Poopradubsil, Amanda Lo, Karen A. William, Ko-Wei Lin, Anita E. Bandrowski, Ibrahim Burak Özyurt, Jeffrey S. Grethe, Maryann E. Martone
Antibody Watch: Text Mining Antibody Specificity from the Literature. CoRR (2020)
Ibrahim Burak Özyurt, Jeffrey S. Grethe
Iterative Document Retrieval via Deep Learning Approaches for Biomedical Question Answering. eScience (2019)
Ibrahim Burak Özyurt, Jeffrey S. Grethe
Foundry: a message-oriented, horizontally scalable ETL system for scientific data integration and enhancement. Database J. Biol. Databases Curation 2018 (2018)
Xiaoling Chen, Anupama E. Gururaj, Ibrahim Burak Özyurt, Ruiling Liu, Ergin Soysal, Trevor Cohen, Firat Tiryaki, Yueling Li, Nansu Zong, Min Jiang, Deevakar Rogith, Mandana Salimi, Hyeon-Eui Kim, Philippe Rocca-Serra, Alejandra N. González-Beltrán, Claudiu Farcas, Todd Johnson, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Ian Fore, Lucila Ohno-Machado, Jeffrey S. Grethe, Hua Xu
DataMed - an open source discovery index for finding biomedical datasets. J. Am. Medical Informatics Assoc. 25 (3) (2018)
David Shin, Ibrahim Burak Özyurt, Greg G. Brown, Christine Fennema-Notestine, Thomas T. Liu
The Cerebral Blood Flow Biomedical Informatics Research Network (CBFBIRN) data repository. NeuroImage 124 (2016)
Hua Xu, Jeffrey S. Grethe, Xiaoling Chen, Ruiling Liu, Ergin Soysal, Anupama E. Gururaj, Yueling Li, Ibrahim Burak Özyurt, Hyeon-Eui Kim, Trevor Cohen, Todd R. Johnson, Mandana Salimi, Saeid Pournejati, Min Jiang, Claudiu Farcas, Alejandra N. González-Beltrán, Philippe Rocca-Serra, Muhamamd F. Amith, Cui Tao, Ian Fore, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Lucila Ohno-Machado
Development of DataMed, a Data Discovery Index Prototype by bioCADDIE: Laying the Groundwork for Biomedical Data Discovery. AMIA (2016)
Jeffrey S. Grethe, Ibrahim Burak Özyurt, Hua Xu, Xiaoling Chen, Ruiling Liu, Ergin Soysal, Anupama E. Gururaj, Hyeon-Eui Kim, Trevor Cohen, Todd R. Johnson, Mandana Salimi, Saeid Pournejati, Min Jiang, Claudiu Farcas, Alejandra N. González-Beltrán, Philippe Rocca-Serra, Muhamamd F. Amith, Cui Tao, Ian Fore, Ronald Margolis, George Alter, Susanna-Assunta Sansone, Lucila Ohno-Machado
A Scalable Dataset Indexing Infrastructure for the bioCADDIE Data Discovery System. AMIA (2016)
Ibrahim Burak Özyurt
Automatic Identification and Classification of Noun Argument Structures in Biomedical Literature. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (6) (2012)
Ibrahim Burak Özyurt, Christopher Condit, Amarnath Gupta
Processing Semantic Keyword Queries for Scientific Literature. NLDB (2012)
David B. Keator, Dingying Wei, Syam Gadde, Henry Jeremy Bockholt, Jeffrey S. Grethe, Daniel S. Marcus, Nicole Aucoin, Ibrahim Burak Özyurt
Derived data storage and exchange workflow for large-scale neuroimaging analyses on the BIRN grid. Frontiers Neuroinformatics 3 (2009)
Lawrence O. Hall, Ibrahim Burak Özyurt, James C. Bezdek
Clustering with a genetically optimized approach. IEEE Trans. Evol. Comput. 3 (2) (1999)
Ibrahim Burak Özyurt, Lawrence O. Hall, Aydin K. Sunol
SQFDiag: semi-quantitative model-based fault monitoring and diagnosis via episodic fuzzy rules. IEEE Trans. Syst. Man Cybern. Part A 29 (3) (1999)
Ibrahim Burak Özyurt, Aydin K. Sunol, Lawrence O. Hall
Chemical Process Fault Diagnosis Using Kernel Retrofitted Fuzzy Genetic Algorithm Based Learner (FGAL) with a Hidden Markov Model. IEA/AIE (Vol. 1) (1998)