Hui Liu

Publication Activity (10 Years)

Years Active: 2010-2024
Publications (10 Years): 24

Top Topics

Protein Interaction

Negative Samples

Caenorhabditis Elegans

Top Venues

Briefings Bioinform.

J. Chem. Inf. Model.

Publications

Hui Liu, Yang Zhang, Judong Luo
Contrastive learning-based histopathological features infer molecular subtypes and clinical outcomes of breast cancer from unannotated whole slide images. Comput. Biol. Medicine 170 (2024)
Jia Zhai, Hui Liu
Cross-Domain Feature Disentanglement for Interpretable Modeling of Tumor Microenvironment Impact on Drug Response. IEEE J. Biomed. Health Informatics 28 (7) (2024)
Lei Deng, Ziyu Fan, Xiaojun Xiao, Hui Liu, Jiaxuan Zhang
Dual-Channel Heterogeneous Graph Neural Network for Predicting microRNA-Mediated Drug Sensitivity. J. Chem. Inf. Model. 62 (23) (2022)
Lei Deng, Dayun Liu, Yizhan Li, Runqi Wang, Junyi Liu, Jiaxuan Zhang, Hui Liu
MSPCD: predicting circRNA-disease associations via integrating multi-source data and hierarchical neural network. BMC Bioinform. (3) (2022)
Hui Liu, Yibiao Huang, Xuejun Liu, Lei Deng
Attention-wise masked graph contrastive learning for predicting molecular property. Briefings Bioinform. 23 (5) (2022)
Jinxian Wang, Xuejun Liu, Siyuan Shen, Lei Deng, Hui Liu
DeepDDS: deep graph neural network with attention mechanism to predict synergistic drug combinations. Briefings Bioinform. 23 (1) (2022)
Jie Wang, Min Wu, Xuhui Huang, Li Wang, Sophia Zhang, Hui Liu, Jie Zheng
SynLethDB 2.0: a web-based knowledge graph database on synthetic lethality for novel anticancer drug discovery. Database J. Biol. Databases Curation 2022 (2022) (2022)
Lei Deng, Yibiao Huang, Xuejun Liu, Hui Liu
Graph2MDA: a multi-modal variational graph embedding model for predicting microbe-drug associations. Bioinform. 38 (4) (2022)
Yuanyuan Deng, Song Yu, Lei Deng, Hui Liu, Xuejun Liu, Yi Luo
A multi-task graph convolutional network modeling of drug-drug interactions and synergistic efficacy. BIBM (2021)
Jinxian Wang, Xuejun Liu, Siyuan Shen, Lei Deng, Hui Liu
DeepDDS: deep graph neural network with attention mechanism to predict synergistic drug combinations. CoRR (2021)
Hui Liu, Wenhao Zhang, Bo Zou, Jinxian Wang, Yuanyuan Deng, Lei Deng
DrugCombDB: a comprehensive database of drug combinations toward the discovery of combinatorial therapy. Nucleic Acids Res. 48 (Database-Issue) (2020)
Hui Liu, Wenhao Zhang, Yinglong Song, Lei Deng, Shuigeng Zhou
HNet-DNN: Inferring New Drug-Disease Associations with Deep Neural Network Based on Heterogeneous Network Features. J. Chem. Inf. Model. 60 (4) (2020)
Lei Deng, Yideng Cai, Wenhao Zhang, Wenyi Yang, Bo Gao, Hui Liu
Pathway-Guided Deep Neural Network toward Interpretable and Predictive Modeling of Drug Sensitivity. J. Chem. Inf. Model. 60 (10) (2020)
Hui Liu, Wenhao Zhang, Lixia Nie, Xiancheng Ding, Judong Luo, Ling Zou
Predicting effective drug combinations using gradient tree boosting based on features extracted from drug-protein heterogeneous network. BMC Bioinform. 20 (1) (2019)
Lei Deng, Youzhi Liu, Yechuan Shi, Hui Liu
A deep neural network approach using distributed representations of RNA sequence and structure for identifying binding site of RNA-binding proteins. BIBM (2019)
Lei Deng, Guolun Zhong, Chenzhe Liu, Judong Luo, Hui Liu
MADOKA: an ultra-fast approach for large-scale protein structure similarity searching. BMC Bioinform. (19) (2019)
Lei Deng, Hui Wu, Hui Liu
D2VCB: A Hybrid Deep Neural Network for the Prediction of in-vivo Protein-DNA Binding from Combined DNA Sequence. BIBM (2019)
Zhanzhan Cheng, Shuigeng Zhou, Yang Wang, Hui Liu, Jihong Guan, Yi-Ping Phoebe Chen
Effectively Identifying Compound-Protein Interactions by Learning from Positive and Unlabeled Examples. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (6) (2018)
Lei Deng, Zuojin Dong, Hui Liu
XPredRBR: Accurate and Fast Prediction of RNA-Binding Residues in Proteins Using eXtreme Gradient Boosting. ISBRA (2018)
Lei Deng, Juan Pan, Xiaojie Xu, Wenyi Yang, Chuyao Liu, Hui Liu
PDRLGB: precise DNA-binding residue prediction using a light gradient boosting machine. BMC Bioinform. (19) (2018)
Zhanzhan Cheng, Kai Huang, Yang Wang, Hui Liu, Jihong Guan, Shuigeng Zhou
Selecting high-quality negative samples for effectively predicting protein-RNA interactions. BMC Syst. Biol. 11 (S-2) (2017)
Hui Liu, Shuigeng Zhou, Wai Lam, Jihong Guan
A new hybrid method for learning bayesian networks: Separation and reunion. Knowl. Based Syst. 121 (2017)
Hui Liu, Mengmeng Guo, Ting Xue, Jihong Guan, Libo Luo, Ziheng Zhuang
Screening lifespan-extending drugs in Caenorhabditis elegans via label propagation on drug-protein networks. BMC Syst. Biol. 10 (4) (2016)
Hui Liu, Yinglong Song, Jihong Guan, Libo Luo, Ziheng Zhuang
Inferring new indications for approved drugs via random walk on drug-disease heterogenous networks. BMC Bioinform. 17 (S-17) (2016)
Hui Liu, Jianjiang Sun, Jihong Guan, Jie Zheng, Shuigeng Zhou
Improving compound-protein interaction prediction by building up highly credible negative samples. Bioinform. 31 (12) (2015)
Wei Xiong, Luyu Xie, Shuigeng Zhou, Hui Liu, Jihong Guan
The centrality of cancer proteins in human protein-protein interaction network: a revisit. Int. J. Comput. Biol. Drug Des. 7 (2/3) (2014)
Hui Liu, Ruichang Zhang, Wei Xiong, Jihong Guan, Ziheng Zhuang, Shuigeng Zhou
A comparative evaluation on prediction methods of nucleosome positioning. Briefings Bioinform. 15 (6) (2014)
Hui Liu, Shuigeng Zhou, Jihong Guan
Identifying Mammalian MicroRNA Targets Based on Supervised Distance Metric Learning. IEEE J. Biomed. Health Informatics 17 (2) (2013)
Wei Xiong, Hui Liu, Jihong Guan, Shuigeng Zhou
Protein function prediction by collective classification with explicit and implicit edges in protein-protein interaction networks. BMC Bioinform. 14 (S-12) (2013)
Wei Xiong, Hui Liu, Jihong Guan, Shuigeng Zhou
Effectively predicting protein functions by collective classification - An extended abstract. BIBM Workshops (2012)
Hui Liu, Shuigeng Zhou, Jihong Guan
Detecting microarray data supported microRNA-mRNA interactions. Int. J. Data Min. Bioinform. 4 (6) (2010)