A deep neural network approach using distributed representations of RNA sequence and structure for identifying binding site of RNA-binding proteins.
Lei DengYouzhi LiuYechuan ShiHui LiuPublished in: BIBM (2019)
Keyphrases
- distributed representations
- neural network
- rna sequences
- rna molecules
- cis regulatory
- binding sites
- secondary structure
- structural motifs
- dna binding
- dna sequences
- protein sequences
- rna secondary structure prediction
- rna secondary structures
- protein structure
- transcription factors
- transcription factor binding sites
- amino acid sequences
- computational methods
- real valued
- gene expression
- protein interaction
- semantic constraints
- protein folding
- structural features
- fuzzy logic