Hongwei Huo

Publication Activity (10 Years)

Years Active: 2005-2024
Publications (10 Years): 21

Top Topics

Compressed Text

Graph Edit Distance

Similarity Search

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Lilu Guo, Hongwei Huo
An efficient Burrows-Wheeler transform-based aligner for short read mapping. Comput. Biol. Chem. 110 (2024)
Hongwei Huo, Peng Long, Jeffrey Scott Vitter
Practical High-Order Entropy-Compressed Text Self-Indexing. IEEE Trans. Knowl. Data Eng. 35 (3) (2023)
Zhen Lv, Kaiyu Shang, Hongwei Huo, Ximeng Liu, Yanguo Peng, Xiangyu Wang, Yaorong Tan
RASK: Range Spatial Keyword Queries on Massive Encrypted Geo-Textual Data. IEEE Trans. Serv. Comput. 16 (5) (2023)
Zhize Li, Jian Li, Hongwei Huo
Optimal in-place suffix sorting. Inf. Comput. 285 (Part) (2022)
Hongwei Huo, Pengfei Liu, Chenhui Wang, Hongbo Jiang, Jeffrey Scott Vitter
CIndex: compressed indexes for fast retrieval of FASTQ files. Bioinform. 38 (2) (2022)
Xiaoyang Chen, Hongwei Huo, Jun Huan, Jeffrey Scott Vitter, Weiguo Zheng, Lei Zou
MSQ-Index: A Succinct Index for Fast Graph Similarity Search. IEEE Trans. Knowl. Data Eng. 33 (6) (2021)
Hongwei Huo, Xiaoyang Chen, Xu Guo, Jeffrey Scott Vitter
Efficient Compression and Indexing for Highly Repetitive DNA Sequence Collections. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (6) (2021)
Zhigang Sun, Hongwei Huo, Jun Huan, Jeffrey Scott Vitter
Feature reduction based on semantic similarity for graph classification. Neurocomputing 397 (2020)
Qiang Yu, Xiang Zhao, Hongwei Huo
A new algorithm for DNA motif discovery using multiple sample sequence sets. J. Bioinform. Comput. Biol. 17 (4) (2019)
Xiaoyang Chen, Hongwei Huo, Jun Huan, Jeffrey Scott Vitter
An efficient algorithm for graph edit distance computation. Knowl. Based Syst. 163 (2019)
Zhize Li, Jian Li, Hongwei Huo
Optimal In-Place Suffix Sorting. DCC (2018)
Qiang Yu, Dingbang Wei, Hongwei Huo
SamSelect: a sample sequence selection algorithm for quorum planted motif search on large DNA datasets. BMC Bioinform. 19 (1) (2018)
Hongwei Huo, Xiaoyang Chen, Yuhao Zhao, Xiaojin Zhu, Jeffrey Scott Vitter
Practical Succinct Text Indexes in External Memory. DCC (2018)
Zhigang Sun, Hongwei Huo, Xiaoyang Chen
Fast Top-K Graph Similarity Search Via Representative Matrices. IEEE Access 6 (2018)
Zhize Li, Jian Li, Hongwei Huo
Optimal In-Place Suffix Sorting. SPIRE (2018)
Xiaoyang Chen, Hongwei Huo, Jun Huan, Jeffrey Scott Vitter
Efficient Graph Similarity Search in External Memory. IEEE Access 5 (2017)
Xiaoyang Chen, Hongwei Huo, Jun Huan, Jeffrey Scott Vitter
Fast Computation of Graph Edit Distance. CoRR (2017)
Hongwei Huo, Zhigang Sun, Shuangjiang Li, Jeffrey Scott Vitter, Xinkun Wang, Qiang Yu, Jun Huan
CS2A: A Compressed Suffix Array-Based Method for Short Read Alignment. DCC (2016)
Qiang Yu, Hongwei Huo, Ruixing Zhao, Dazheng Feng, Jeffrey Scott Vitter, Jun Huan
) motif search. BMC Bioinform. 17 (S-9) (2016)
Xiaoyang Chen, Hongwei Huo, Jun Huan, Jeffrey Scott Vitter
MSQ-Index: A Succinct Index for Fast Graph Similarity Search. CoRR (2016)
Zhize Li, Jian Li, Hongwei Huo
Optimal In-Place Suffix Sorting. CoRR (2016)
Jiying Huang, Zhangdui Zhong, Hongwei Huo
A dynamic energy-saving strategy for green cellular railway communication network. EURASIP J. Wirel. Commun. Netw. 2015 (2015)
Qiang Yu, Hongwei Huo, Ruixing Zhao, Dazheng Feng, Jeffrey Scott Vitter, Jun Huan
Reference sequence selection for motif searches. BIBM (2015)
Hongwei Huo, Longgang Chen, Heng Zhao, Jeffrey Scott Vitter, Yakov Nekrich, Qiang Yu
A Data-Aware FM-index. ALENEX (2015)
Qiang Yu, Hongwei Huo, Jeffrey Scott Vitter, Jun Huan, Yakov Nekrich
An Efficient Exact Algorithm for the Motif Stem Search Problem over Large Alphabets. IEEE ACM Trans. Comput. Biol. Bioinform. 12 (2) (2015)
Hongwei Huo, Longgang Chen, Jeffrey Scott Vitter, Yakov Nekrich
A Practical Implementation of Compressed Suffix Arrays with Applications to Self-Indexing. DCC (2014)
Qiang Yu, Hongwei Huo, Xiaoyang Chen, Haitao Guo, Jeffrey Scott Vitter, Jun Huan
An efficient motif finding algorithm for large DNA data sets. BIBM (2014)
Yipu Zhang, Hongwei Huo, Qiang Yu
A Heuristic Cluster-Based EM Algorithm for the Planted (L, d) Problem. J. Bioinform. Comput. Biol. 11 (4) (2013)
Qiang Yu, Hongwei Huo, Jeffrey Scott Vitter, Jun Huan, Yakov Nekrich
StemFinder: An efficient algorithm for searching motif stems over large alphabets. BIBM (2013)
Hongwei Huo, Shuai Lin, Qiang Yu, Yipu Zhang, Vojislav Stojkovic
A MapReduce-based Algorithm for Motif Search. IPDPS Workshops (2012)
Cuimei Wu, Hairong Yan, Hongwei Huo
A multi-channel MAC protocol design based on IEEE 802.15.4 standard in industry. INDIN (2012)
Hongwei Huo, Youzhi Xu, Hongke Zhang, Yu Hsiu Chuang, Tzong-Chen Wu
Wireless-Sensor-Networks-based healthcare system: a survey on the view of communication paradigms. Int. J. Ad Hoc Ubiquitous Comput. 8 (3) (2011)
Hairong Yan, Hongwei Huo, Youzhi Xu, Mikael Gidlund
Wireless sensor network based E-health system ?? implementation and experimental results. IEEE Trans. Consumer Electron. 56 (4) (2010)
Hongwei Huo, Zhenhua Zhao, Vojislav Stojkovic, Lifang Liu
Optimizing genetic algorithm for motif discovery. Math. Comput. Model. 52 (11-12) (2010)
Hongwei Huo, Vojislav Stojkovic, Qiao-Luan Xie
A Quantum-Inspired Genetic Algorithm Based on Probabilistic Coding for Multiple Sequence Alignment. J. Bioinform. Comput. Biol. 8 (1) (2010)
Hongwei Huo, Xiaowu Wang, Vojislav Stojkovic
An Adaptive Suffix Tree Based Algorithm for Repeats Recognition in a DNA Sequence. IJCBS (2009)
Hongwei Huo, Xiaowu Wang, Vojislav Stojkovic
Repeats identification using improved suffix trees. Int. J. Comput. Biol. Drug Des. 2 (3) (2009)
Lifang Liu, Licheng Jiao, Hongwei Huo
A Greedy Two-stage Gibbs Sampling Method for Motif Discovery in Biological Sequences. BMEI (1) (2008)
Hongwei Huo, Vojislav Stojkovic
A Suffix Tree Construction Algorithm for DNA Sequences. BIBE (2007)
Hongwei Huo, Deyun Gao, Yanchao Niu, Shuai Gao
ASDP: An Action-Based Service Discovery Protocol Using Ant Colony Algorithm in Wireless Sensor Networks. MSN (2007)
Yanchao Niu, Sidong Zhang, Xiaoyu Xu, Hongwei Huo, Shuai Gao
An Enhanced DV-hop Localization Algorithm for Irregularly Shaped Sensor Networks. MSN (2007)
Hongwei Huo, Vojislav Stojkovic
A simulated annealing algorithm for multiple sequence alignment with guaranteed accuracy. ICNC (2) (2007)
Shuai Gao, Yanchao Niu, Hongwei Huo, Hongke Zhang
An Energy Efficient Communication Protocol Based on Data Equilibrium in Mobile Wireless Sensor Network. MSN (2007)
Hongwei Huo, Vojislav Stojkovic
Two-Phase Quantum Based Evolutionary Algorithm for Multiple Sequence Alignment. CIS (2006)
Hongwei Huo, Vojislav Stojkovic, Zhiwei Xiao
A Maximum Weighted Path Approach to Multiple Alignments for DNA Sequences. ICNC (2) (2006)
Vojislav Stojkovic, Hongwei Huo
Software Agents Action Securities. CIS (2006)
Hongwei Huo, Hua Ming
Simulated Annealing with Injecting Star-Alignment for Multiple Sequence Alignments. CIS (1) (2005)
Lifang Liu, Hongwei Huo, Bao-Shu Wang
HGA-COFFEE : Aligning Multiple Sequences by Hybrid Genetic Algorithm. ADMA (2005)
Lifang Liu, Hongwei Huo, Bao-Shu Wang
A Novel Optimization of Profile HMM by a Hybrid Genetic Algorithm. IWANN (2005)