StemFinder: An efficient algorithm for searching motif stems over large alphabets.
Qiang YuHongwei HuoJeffrey Scott VitterJun HuanYakov NekrichPublished in: BIBM (2013)
Keyphrases
- significant improvement
- learning algorithm
- highly efficient
- computational complexity
- search space
- detection algorithm
- linear programming
- times faster
- cost function
- optimal solution
- dynamic programming
- computational cost
- np hard
- optimization algorithm
- clustering method
- recognition algorithm
- particle swarm optimization
- expectation maximization
- convex hull
- selection algorithm
- decision trees