Firas Khader

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 26

Top Topics

Diffusion Models

Magnetic Resonance

Top Venues

Medical Image Anal.

IEEE Trans. Medical Imaging

Publications

Omar S. M. El Nahhas, Georg Wölflein, Marta Ligero, Tim Lenz, Marko van Treeck, Firas Khader, Daniel Truhn, Jakob Nikolas Kather
Joint multi-task learning improves weakly-supervised biomarker prediction in computational pathology. CoRR (2024)
Daniel Truhn, Soroosh Tayebi Arasteh, Oliver Lester Saldanha, Gustav Müller-Franzes, Firas Khader, Philip Quirke, Nicholas P. West, Richard Gray, Gordon G. A. Hutchins, Jacqueline A. James, Maurice B. Loughrey, Manuel Salto-Tellez, Hermann Brenner, Alexander Brobeil, Tanwei Yuan, Jenny Chang-Claude, Michael Hoffmeister, Sebastian Foersch, Tianyu Han, Sebastian Keil, Maximilian Schulze-Hagen, Peter Isfort, Philipp Bruners, Georgios Kaissis, Christiane Kuhl, Sven Nebelung, Jakob Nikolas Kather
Encrypted federated learning for secure decentralized collaboration in cancer image analysis. Medical Image Anal. 92 (2024)
Evi M. C. Huijben, Maarten L. Terpstra, Arthur Jr Galapon, Suraj Pai, Adrian Thummerer, Peter Koopmans, Manya Afonso, Maureen A. J. M. van Eijnatten, Oliver J. Gurney-Champion, Zeli Chen, Yiwen Zhang, Kaiyi Zheng, Chuanpu Li, Haowen Pang, Chuyang Ye, Runqi Wang, Tao Song, Fuxin Fan, Jingna Qiu, Yixing Huang, Juhyung Ha, Jong Sung Park, Alexandra Alain-Beaudoin, Silvain Bériault, Pengxin Yu, Hongbin Guo, Zhanyao Huang, Gengwan Li, Xueru Zhang, Yubo Fan, Han Liu, Bowen Xin, Aaron Nicolson, Lujia Zhong, Zhiwei Deng, Gustav Müller-Franzes, Firas Khader, Xia Li, Ye Zhang, Cédric Hémon, Valentin Boussot, Zhihao Zhang, Long Wang, Lu Bai, Shaobin Wang, Derk Mus, Bram Kooiman, Chelsea A. H. Sargeant, Edward G. A. Henderson, Satoshi Kondo, Satoshi Kasai, Reza Karimzadeh, Bulat Ibragimov, Thomas Helfer, Jessica Dafflon, Zijie Chen, Enpei Wang, Zoltán Perkó, Matteo Maspero
Generating synthetic computed tomography for radiotherapy: SynthRAD2023 challenge report. Medical Image Anal. 97 (2024)
Firas Khader, Omar S. M. El Nahhas, Tianyu Han, Gustav Müller-Franzes, Sven Nebelung, Jakob Nikolas Kather, Daniel Truhn
Compute-Efficient Medical Image Classification with Softmax-Free Transformers and Sequence Normalization. CoRR (2024)
Tianyu Han, Sven Nebelung, Firas Khader, Jakob Nikolas Kather, Daniel Truhn
On Instabilities of Unsupervised Denoising Diffusion Models in Magnetic Resonance Imaging Reconstruction. CoRR (2024)
Coen de Vente, Koenraad A. Vermeer, Nicolas Jaccard, He Wang, Hongyi Sun, Firas Khader, Daniel Truhn, Temirgali Aimyshev, Yerkebulan Zhanibekuly, Tien-Dung Le, Adrian Galdran, Miguel Ángel González Ballester, Gustavo Carneiro, Devika R. G, Hrishikesh Panikkasseril Sethumadhavan, Densen Puthussery, Hong Liu, Zekang Yang, Satoshi Kondo, Satoshi Kasai, Edward Wang, Ashritha Durvasula, Jónathan Heras, Miguel Ángel Zapata, Teresa Araújo, Guilherme Aresta, Hrvoje Bogunovic, Mustafa Arikan, Yeong Chan Lee, Hyun Bin Cho, Yoon Ho Choi, Abdul Qayyum, Imran Razzak, Bram van Ginneken, Hans G. Lemij, Clara I. Sánchez
AIROGS: Artificial Intelligence for Robust Glaucoma Screening Challenge. IEEE Trans. Medical Imaging 43 (1) (2024)
Patrick Wienholt, Alexander Hermans, Firas Khader, Behrus Puladi, Bastian Leibe, Christiane Kuhl, Sven Nebelung, Daniel Truhn
An Ordinal Regression Framework for a Deep Learning Based Severity Assessment for Chest Radiographs. CoRR (2024)
Firas Khader, Johannes Stegmaier, Sven Nebelung, Daniel Truhn
Multi-View Abnormality Detection in Clinical Knee MRI Studies Using Transformers. ISBI (2023)
Firas Khader, Gustav Müller-Franzes, Tianyu Han, Sven Nebelung, Christiane Kuhl, Johannes Stegmaier, Daniel Truhn
Transformers for CT Reconstruction from Monoplanar and Biplanar Radiographs. SASHIMI@MICCAI (2023)
Firas Khader, Gustav Müller-Franzes, Tianyu Han, Sven Nebelung, Christiane Kuhl, Johannes Stegmaier, Daniel Truhn
Transformers for CT Reconstruction From Monoplanar and Biplanar Radiographs. CoRR (2023)
Tianyu Han, Laura Zigutyte, Luisa Huck, Marc Huppertz, Robert Siepmann, Yossi Gandelsman, Christian Blüthgen, Firas Khader, Christiane Kuhl, Sven Nebelung, Jakob Nikolas Kather, Daniel Truhn
Reconstruction of Patient-Specific Confounders in AI-based Radiologic Image Interpretation using Generative Pretraining. CoRR (2023)
Tianyu Han, Sven Nebelung, Firas Khader, Tianci Wang, Gustav Mueller-Franzes, Christiane Kuhl, Sebastian Försch, Jens Kleesiek, Christoph Haarburger, Keno K. Bressem, Jakob Nikolas Kather, Daniel Truhn
Medical Foundation Models are Susceptible to Targeted Misinformation Attacks. CoRR (2023)
Firas Khader, Jakob Nikolas Kather, Tianyu Han, Sven Nebelung, Christiane Kuhl, Johannes Stegmaier, Daniel Truhn
Cascaded Cross-Attention Networks for Data-Efficient Whole-Slide Image Classification Using Transformers. MLMI@MICCAI (2) (2023)
Firas Khader, Gustav Müller-Franzes, Soroosh Tayebi Arasteh, Tianyu Han, Jakob Nikolas Kather, Johannes Stegmaier, Sven Nebelung, Daniel Truhn
Vector-Quantized Latent Flows for Medical Image Synthesis and Out-Of-Distribution Detection. ISBI (2023)
Gustav Müller-Franzes, Fritz Müller-Franzes, Luisa Huck, Vanessa Raaff, Eva Kemmer, Firas Khader, Soroosh Tayebi Arasteh, Teresa Nolte, Jakob Nikolas Kather, Sven Nebelung, Christiane Kuhl, Daniel Truhn
Fibroglandular Tissue Segmentation in Breast MRI using Vision Transformers - A multi-institutional evaluation. CoRR (2023)
Coen de Vente, Koenraad A. Vermeer, Nicolas Jaccard, He Wang, Hongyi Sun, Firas Khader, Daniel Truhn, Temirgali Aimyshev, Yerkebulan Zhanibekuly, Tien-Dung Le, Adrian Galdran, Miguel Ángel González Ballester, Gustavo Carneiro, Devika R. G, Hrishikesh P. S, Densen Puthussery, Hong Liu, Zekang Yang, Satoshi Kondo, Satoshi Kasai, Edward Wang, Ashritha Durvasula, Jónathan Heras, Miguel Ángel Zapata, Teresa Araújo, Guilherme Aresta, Hrvoje Bogunovic, Mustafa Arikan, Yeong Chan Lee, Hyun Bin Cho, Yoon Ho Choi, Abdul Qayyum, Imran Razzak, Bram van Ginneken, Hans G. Lemij, Clara I. Sánchez
AIROGS: Artificial Intelligence for RObust Glaucoma Screening Challenge. CoRR (2023)
Omar S. M. El Nahhas, Marko van Treeck, Georg Wölflein, Michaela Unger, Marta Ligero, Tim Lenz, Sophia J. Wagner, Katherine Jane Hewitt, Firas Khader, Sebastian Foersch, Daniel Truhn, Jakob Nikolas Kather
From Whole-slide Image to Biomarker Prediction: A Protocol for End-to-End Deep Learning in Computational Pathology. CoRR (2023)
Firas Khader, Jakob Nikolas Kather, Tianyu Han, Sven Nebelung, Christiane Kuhl, Johannes Stegmaier, Daniel Truhn
Cascaded Cross-Attention Networks for Data-Efficient Whole-Slide Image Classification Using Transformers. CoRR (2023)
Firas Khader, Gustav Mueller-Franzes, Tianci Wang, Tianyu Han, Soroosh Tayebi Arasteh, Christoph Haarburger, Johannes Stegmaier, Keno K. Bressem, Christiane Kuhl, Sven Nebelung, Jakob Nikolas Kather, Daniel Truhn
Medical Diagnosis with Large Scale Multimodal Transformers: Leveraging Diverse Data for More Accurate Diagnosis. CoRR (2022)
Gustav Müller-Franzes, Jan Moritz Niehues, Firas Khader, Soroosh Tayebi Arasteh, Christoph Haarburger, Christiane Kuhl, Tianci Wang, Tianyu Han, Sven Nebelung, Jakob Nikolas Kather, Daniel Truhn
Diffusion Probabilistic Models beat GANs on Medical Images. CoRR (2022)
Soroosh Tayebi Arasteh, Peter Isfort, Marwin Saehn, Gustav Mueller-Franzes, Firas Khader, Jakob Nikolas Kather, Christiane Kuhl, Sven Nebelung, Daniel Truhn
Collaborative Training of Medical Artificial Intelligence Models with non-uniform Labels. CoRR (2022)
Firas Khader, Gustav Mueller-Franzes, Soroosh Tayebi Arasteh, Tianyu Han, Christoph Haarburger, Maximilian Schulze-Hagen, Philipp Schad, Sandy Engelhardt, Bettina Baeßler, Sebastian Foersch, Johannes Stegmaier, Christiane Kuhl, Sven Nebelung, Jakob Nikolas Kather, Daniel Truhn
Medical Diffusion - Denoising Diffusion Probabilistic Models for 3D Medical Image Generation. CoRR (2022)
Narmin Ghaffari Laleh, Hannah Sophie Muti, Chiara Maria Lavinia Loeffler, Amelie Echle, Oliver Lester Saldanha, Faisal Mahmood, Ming Y. Lu, Christian Trautwein, Rupert Langer, Bastian Dislich, Roman D. Buelow, Heike Irmgard Grabsch, Hermann Brenner, Jenny Chang-Claude, Elizabeth Alwers, Titus J. Brinker, Firas Khader, Daniel Truhn, Nadine T. Gaisa, Peter Boor, Michael Hoffmeister, Volkmar Schulz, Jakob Nikolas Kather
Erratum to 'Benchmarking weakly-supervised deep learning pipelines for whole slide classification in computational pathology' Medical Image Analysis, Volume 79, July 2022, 102474. Medical Image Anal. 82 (2022)
Narmin Ghaffari Laleh, Hannah Sophie Muti, Chiara Maria Lavinia Loeffler, Amelie Echle, Oliver Lester Saldanha, Faisal Mahmood, Ming Y. Lu, Christian Trautwein, Rupert Langer, Bastian Dislich, Roman D. Buelow, Heike Irmgard Grabsch, Hermann Brenner, Jenny Chang-Claude, Elizabeth Alwers, Titus J. Brinker, Firas Khader, Daniel Truhn, Nadine T. Gaisa, Peter Boor, Michael Hoffmeister, Volkmar Schulz, Jakob Nikolas Kather
Benchmarking weakly-supervised deep learning pipelines for whole slide classification in computational pathology. Medical Image Anal. 79 (2022)
Víctor M. Campello, Polyxeni Gkontra, Cristian Izquierdo, Carlos Martín-Isla, Alireza Sojoudi, Peter M. Full, Klaus H. Maier-Hein, Yao Zhang, Zhiqiang He, Jun Ma, Mario Parreño, Alberto Albiol, Fanwei Kong, Shawn C. Shadden, Jorge Corral Acero, Vaanathi Sundaresan, Mina Saber, Mustafa A. Alattar, Hongwei Li, Bjoern H. Menze, Firas Khader, Christoph Haarburger, Cian M. Scannell, Mitko Veta, Adam Carscadden, Kumaradevan Punithakumar, Xiao Liu, Sotirios A. Tsaftaris, Xiaoqiong Huang, Xin Yang, Lei Li, Xiahai Zhuang, David Viladés, Martín Luís Descalzo, Andrea Guala, Lucia La Mura, Matthias G. Friedrich, Ria Garg, Julie Lebel, Filipe Henriques, Mahir Karakas, Ersin Çavus, Steffen E. Petersen, Sergio Escalera, Santi Seguí, José F. Rodríguez Palomares, Karim Lekadir
Multi-Centre, Multi-Vendor and Multi-Disease Cardiac Segmentation: The M&Ms Challenge. IEEE Trans. Medical Imaging 40 (12) (2021)
Firas Khader, Justus Schock, Daniel Truhn, Fabian Morsbach, Christoph Haarburger
Adaptive Preprocessing for Generalization in Cardiac MR Image Segmentation. M&Ms and EMIDEC/STACOM@MICCAI (2020)