Fengfeng Zhou

Publication Activity (10 Years)

Years Active: 2003-2024
Publications (10 Years): 54

Top Topics

Top Venues

Comput. Biol. Medicine

Publications

Ruochi Zhang, Chao Wu, Qian Yang, Chang Liu, Yan Wang, Kewei Li, Lan Huang, Fengfeng Zhou
MolFeSCue: enhancing molecular property prediction in data-limited and imbalanced contexts using few-shot and contrastive learning. Bioinform. 40 (4) (2024)
Ruochi Zhang, Haoran Wu, Chang Liu, Huaping Li, Yuqian Wu, Kewei Li, Yifan Wang, Yifan Deng, Jiahui Chen, Fengfeng Zhou, Xin Gao
PepHarmony: A Multi-View Contrastive Learning Framework for Integrated Sequence and Structure-Based Peptide Encoding. CoRR (2024)
Shikun Feng, Jiaxin Zheng, Yinjun Jia, Yanwen Huang, Fengfeng Zhou, Wei-Ying Ma, Yanyan Lan
MoleculeCLA: Rethinking Molecular Benchmark via Computational Ligand-Target Binding Analysis. CoRR (2024)
Kewei Li, Yuqian Wu, Yutong Guo, Yinheng Li, Yusi Fan, Ruochi Zhang, Lan Huang, Fengfeng Zhou
AMPCliff: quantitative definition and benchmarking of activity cliffs in antimicrobial peptides. CoRR (2024)
Yan Wang, Ruochi Zhang, Qian Yang, Qiong Zhou, Shengde Zhang, Yusi Fan, Lan Huang, Kewei Li, Fengfeng Zhou
FairCare: Adversarial training of a heterogeneous graph neural network with attention mechanism to learn fair representations of electronic health records. Inf. Process. Manag. 61 (2) (2024)
Meiyu Duan, Yaqing Liu, Dong Zhao, Haijun Li, Gongyou Zhang, Hongmei Liu, Yueying Wang, Yusi Fan, Lan Huang, Fengfeng Zhou
Gender-specific dysregulations of nondifferentially expressed biomarkers of metastatic colon cancer. Comput. Biol. Chem. 104 (2023)
Ruochi Zhang, Haoran Wu, Yuting Xiu, Kewei Li, Ningning Chen, Yu Wang, Yan Wang, Xin Gao, Fengfeng Zhou
PepLand: a large-scale pre-trained peptide representation model for a comprehensive landscape of both canonical and non-canonical amino acids. CoRR (2023)
Gancheng Zhu, Yusi Fan, Fei Li, Annebella Tsz Ho Choi, Zhikang Tan, Yiruo Cheng, Kewei Li, Siyang Wang, Changfan Luo, Hongmei Liu, Gongyou Zhang, Zhaomin Yao, Yaqi Zhang, Lan Huang, Fengfeng Zhou
GSRNet, an adversarial training-based deep framework with multi-scale CNN and BiGRU for predicting genomic signals and regions. Expert Syst. Appl. 229 (Part A) (2023)
Changfan Luo, Yiping Xu, Yongkang Shao, Zihan Wang, Jianzheng Hu, Jiawei Yuan, Yuchen Liu, Meiyu Duan, Lan Huang, Fengfeng Zhou
EvaGoNet: An integrated network of variational autoencoder and Wasserstein generative adversarial network with gradient penalty for binary classification tasks. Inf. Sci. 629 (2023)
Xingyu Fu, Fengfeng Zhou, Dheeraj Peddireddy, Zhengyang Kang, Martin Byung-Guk Jun, Vaneet Aggarwal
An finite element analysis surrogate model with boundary oriented graph embedding approach for rapid design. J. Comput. Des. Eng. 10 (3) (2023)
Meiyu Duan, Yueying Wang, Dong Zhao, Hongmei Liu, Gongyou Zhang, Kewei Li, Haotian Zhang, Lan Huang, Ruochi Zhang, Fengfeng Zhou
Orchestrating information across tissues via a novel multitask GAT framework to improve quantitative gene regulation relation modeling for survival analysis. Briefings Bioinform. 24 (4) (2023)
Xin Juan, Fengfeng Zhou, Wentao Wang, Wei Jin, Jiliang Tang, Xin Wang
INS-GNN: Improving graph imbalance learning with self-supervision. Inf. Sci. 637 (2023)
Fei Li, Shuai Liu, Kewei Li, Yaqi Zhang, Meiyu Duan, Zhaomin Yao, Gancheng Zhu, Yutong Guo, Ying Wang, Lan Huang, Fengfeng Zhou
EpiTEAmDNA: Sequence feature representation via transfer learning and ensemble learning for identifying multiple DNA epigenetic modification types across species. Comput. Biol. Medicine 160 (2023)
Yi Lai, Dong Xu, Kewei Li, Lin Song, Yiming Chen, He Li, Zhaoyang Hu, Fengfeng Zhou, Jiaqing Zhou, Yuling Shen
Multi-view progression diagnosis of thyroid cancer by integrating platelet transcriptomes and blood routine tests. Comput. Biol. Medicine 167 (2023)
Chunyan Tang, Cheng Zhong, Mian Wang, Fengfeng Zhou
FMGNN: A Method to Predict Compound-Protein Interaction With Pharmacophore Features and Physicochemical Properties of Amino Acids. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (2) (2023)
Yan Wang, Ruochi Zhang, Shengde Zhang, Liming Guo, Qiong Zhou, Bowen Zhao, Xiaotong Mo, Qian Yang, Yajuan Huang, Kewei Li, Yusi Fan, Lan Huang, Fengfeng Zhou
OCMR: A comprehensive framework for optical chemical molecular recognition. Comput. Biol. Medicine 163 (2023)
Yaqi Zhang, Gancheng Zhu, Kewei Li, Fei Li, Lan Huang, Meiyu Duan, Fengfeng Zhou
HLAB: learning the BiLSTM features from the ProtBert-encoded proteins for the class I HLA-peptide binding prediction. Briefings Bioinform. 23 (5) (2022)
Qian Wang, Meiyu Duan, Yusi Fan, Shuai Liu, Yanjiao Ren, Lan Huang, Fengfeng Zhou
Transforming OMIC features for classification using siamese convolutional networks. J. Bioinform. Comput. Biol. 20 (3) (2022)
Haishi Zhao, Fengfeng Zhou, Lorenzo Bruzzone, Renchu Guan, Chen Yang
Superpixel-Level Global and Local Similarity Graph-Based Clustering for Large Hyperspectral Images. IEEE Trans. Geosci. Remote. Sens. 60 (2022)
Meiyu Duan, Yueying Wang, Ya Qiao, Yangyang Wang, Xingyuan Pan, Zhuyu Hu, Yanyue Ran, Xian Fu, Yusi Fan, Lan Huang, Fengfeng Zhou
Pan-cancer identification of the relationship of metabolism-related differentially expressed transcription regulation with non-differentially expressed target genes via a gated recurrent unit network. Comput. Biol. Medicine 148 (2022)
Sida Gao, Puli Wang, Yuming Feng, Xuchen Xie, Meiyu Duan, Yusi Fan, Shuai Liu, Lan Huang, Fengfeng Zhou
RIFS2D: A two-dimensional version of a randomly restarted incremental feature selection algorithm with an application for detecting low-ranked biomarkers. Comput. Biol. Medicine 133 (2021)
Jinpu Cai, Yuyang Xu, Wen Zhang, Shiying Ding, Yuewei Sun, Jingyi Lyu, Meiyu Duan, Shuai Liu, Lan Huang, Fengfeng Zhou
A comprehensive comparison of residue-level methylation levels with the regression-based gene-level methylation estimations by ReGear. Briefings Bioinform. 22 (4) (2021)
Meiyu Duan, Lei Zhang, Yueying Wang, Yusi Fan, Shuai Liu, Qiong Yu, Lan Huang, Fengfeng Zhou
Computational pan-cancer characterization of model-based quantitative transcription regulations dysregulated in regional lymph node metastasis. Comput. Biol. Medicine 135 (2021)
Yuanyuan Han, Lan Huang, Fengfeng Zhou
A dynamic recursive feature elimination framework (dRFE) to further refine a set of OMIC biomarkers. Bioinform. 37 (15) (2021)
Xingyu Fu, Fengfeng Zhou, Dheeraj Peddireddy, Zhengyang Kang, Martin Byung-Guk Jun, Vaneet Aggarwal
An FEA surrogate model with Boundary Oriented Graph Embedding approach. CoRR (2021)
Haishi Zhao, Lorenzo Bruzzone, Renchu Guan, Fengfeng Zhou, Chen Yang
Spectral-Spatial Genetic Algorithm-Based Unsupervised Band Selection for Hyperspectral Image Classification. IEEE Trans. Geosci. Remote. Sens. 59 (11) (2021)
Tong Shao, Wenfang Wang, Meiyu Duan, Jiahui Pan, Zhuoyuan Xin, Baoyue Liu, Fengfeng Zhou, Guoqing Wang
Application of Bayesian phylogenetic inference modelling for evolutionary genetic analysis and dynamic changes in 2019-nCoV. Briefings Bioinform. 22 (2) (2021)
Daiguo Deng, Xiaowei Chen, Ruochi Zhang, Zengrong Lei, Xiaojian Wang, Fengfeng Zhou
XGraphBoost: Extracting Graph Neural Network-Based Features for a Better Prediction of Molecular Properties. J. Chem. Inf. Model. 61 (6) (2021)
Daiguo Deng, Xiaowei Chen, Ruochi Zhang, Zengrong Lei, Xiaojian Wang, Fengfeng Zhou
Correction to "XGraphBoost: Extracting Graph Neural Network-Based Features for a Better Prediction of Molecular Properties". J. Chem. Inf. Model. 61 (9) (2021)
Yiran Huang, Yusi Xie, Cheng Zhong, Fengfeng Zhou
Finding branched pathways in metabolic network via atom group tracking. PLoS Comput. Biol. 17 (2) (2021)
Shuai Liu, Han Li, Qichen Zheng, Lu Yang, Meiyu Duan, Xin Feng, Fei Li, Lan Huang, Fengfeng Zhou
Survival Time Prediction of Breast Cancer Patients Using Feature Selection Algorithm Crystall. IEEE Access 9 (2021)
Fengfeng Zhou, Meiyu Duan
Impacts of high-quality public data: Special issue on integrating public and in-house biomedical data. J. Bioinform. Comput. Biol. 19 (3) (2021)
Zheng Chen, Meng Pang, Zixin Zhao, Shuainan Li, Rui Miao, Yifan Zhang, Xiaoyue Feng, Xin Feng, Yexian Zhang, Meiyu Duan, Lan Huang, Fengfeng Zhou
Feature selection may improve deep neural networks for the bioinformatics problems. Bioinform. 36 (5) (2020)
Zhipeng Wei, Jingjing Chen, Xingxing Wei, Linxi Jiang, Tat-Seng Chua, Fengfeng Zhou, Yu-Gang Jiang
Heuristic Black-Box Adversarial Attacks on Video Recognition Models. AAAI (2020)
Chenwei Lou, Jian Zhao, Ruoyao Shi, Qian Wang, Wenyang Zhou, Yubo Wang, Guoqing Wang, Lan Huang, Xin Feng, Fengfeng Zhou
sefOri: selecting the best-engineered sequence features to predict DNA replication origins. Bioinform. 36 (1) (2020)
Zhipeng Wei, Shiying Ding, Meiyu Duan, Shuai Liu, Lan Huang, Fengfeng Zhou
FeSTwo, a two-step feature selection algorithm based on feature engineering and sampling for the chronological age regression problem. Comput. Biol. Medicine 125 (2020)
Lei Wang, Zhu-Hong You, De-Shuang Huang, Fengfeng Zhou
Combining High Speed ELM Learning with a Deep Convolutional Neural Network Feature Encoding for Predicting Protein-RNA Interactions. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (3) (2020)
Jialiang Li, Zhaomin Yao, Meiyu Duan, Shuai Liu, Fei Li, Haiyang Zhu, Zhiqiang Xia, Lan Huang, Fengfeng Zhou
MuscNet, a Weighted Voting Model of Multi-Source Connectivity Networks to Predict Mild Cognitive Impairment Using Resting-State Functional MRI. IEEE Access 8 (2020)
Yexian Zhang, Ruoyao Shi, Chaorong Chen, Meiyu Duan, Shuai Liu, Yanjiao Ren, Lan Huang, Xiaofeng Dai, Fengfeng Zhou
ELMO: An Efficient Logistic Regression-Based Multi-Omic Integrated Analysis Method for Breast Cancer Intrinsic Subtypes. IEEE Access 8 (2020)
Shuhan Yang, Bo Li, Yinda Zhang, Meiyu Duan, Shuai Liu, Yexian Zhang, Xin Feng, Renbo Tan, Lan Huang, Fengfeng Zhou
Selection of features for patient-independent detection of seizure events using scalp EEG signals. Comput. Biol. Medicine 119 (2020)
Xin Feng, Lelian Song, Shaofei Wang, Haoqiu Song, Hang Chen, Yuxuan Liu, Chenwei Lou, Jian Zhao, Quewang Liu, Yang Liu, Ruixue Zhao, Kai Xing, Sijie Li, Yunhe Yu, Zhenyu Liu, Chengyang Yin, Bing Han, Ye Du, Ruihao Xin, Lan Huang, Zhimin Fan, Fengfeng Zhou
Accurate Prediction of Neoadjuvant Chemotherapy Pathological Complete Remission (pCR) for the Four Sub-Types of Breast Cancer. IEEE Access 7 (2019)
Zhipeng Wei, Jingjing Chen, Zhaoyan Ming, Chong-Wah Ngo, Tat-Seng Chua, Fengfeng Zhou
DietLens-Eout: Large Scale Restaurant Food Photo Recognition. ICMR (2019)
Bingxin Yu, Zhongyu Wang, Renxiang Zhu, Xin Feng, Mingran Qi, Jialiang Li, Ruixue Zhao, Lan Huang, Ruihao Xin, Fan Li, Fengfeng Zhou
The Transverse Ultrasonogram of Thyroid Papillary Carcinoma Has a Better Prediction Accuracy Than the Longitudinal One. IEEE Access 7 (2019)
Zhipeng Wei, Jingjing Chen, Xingxing Wei, Linxi Jiang, Tat-Seng Chua, Fengfeng Zhou, Yu-Gang Jiang
Heuristic Black-box Adversarial Attacks on Video Recognition Models. CoRR (2019)
Hao Zhang, Renchu Guan, Fengfeng Zhou, Yanchun Liang, Zhi-Hui Zhan, Lan Huang, Xiaoyue Feng
Deep Residual Convolutional Neural Network for Protein-Protein Interaction Extraction. IEEE Access 7 (2019)
Kangning Li, Shangshang Wang, Chang Du, Yuxin Huang, Xin Feng, Fengfeng Zhou
Accurate Fatigue Detection Based on Multiple Facial Morphological Features. J. Sensors 2019 (2019)
Renxiang Zhu, Zhongyu Wang, Yifan Zhang, Bingxin Yu, Mingran Qi, Xin Feng, Chenjun Wu, Yuxuan Cui, Lan Huang, Fan Li, Fengfeng Zhou
Integrating Five Feature Types Extracted From Ultrasonograms to Improve the Prediction of Thyroid Papillary Carcinoma. IEEE Access 7 (2019)
Ruochi Zhang, Ruixue Zhao, Xinyang Zhao, Di Wu, Weiwei Zheng, Xin Feng, Fengfeng Zhou
pyHIVE, a health-related image visualization and engineering system using Python. BMC Bioinform. 19 (1) (2018)
Yinda Zhang, Shuhan Yang, Yang Liu, Yexian Zhang, Bingfeng Han, Fengfeng Zhou
Integration of 24 Feature Types to Accurately Detect and Predict Seizures Using Scalp EEG Signals. Sensors 18 (5) (2018)
Ruixue Zhao, Ruochi Zhang, Tongyu Tang, Xin Feng, Jialiang Li, Yue Liu, Renxiang Zhu, Guangze Wang, Kangning Li, Wenyang Zhou, Yunfei Yang, Yuzhao Wang, Yuanjie Ba, Jiaojiao Zhang, Yang Liu, Fengfeng Zhou
TriZ-a rotation-tolerant image feature and its application in endoscope-based disease diagnosis. Comput. Biol. Medicine 99 (2018)
Ruiquan Ge, Guoqin Mai, Ruochi Zhang, Xundong Wu, Qing Wu, Fengfeng Zhou
MUSTv2: An Improved De Novo Detection Program for Recently Active Miniature Inverted Repeat Transposable Elements (MITEs). J. Integr. Bioinform. 14 (3) (2017)
Pu Wang, Ruiquan Ge, Xuan Xiao, Manli Zhou, Fengfeng Zhou
hMuLab: A Biomedical Hybrid MUlti-LABel Classifier Based on Multiple Linear Regression. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (5) (2017)
Dongli Ma, Shan Zhong, Xiaorong Liu, Huirong Mai, Guoqin Mai, Cheng Xu, Fengfeng Zhou
CD3D and PRKCQ work together to discriminate between B-cell and T-cell acute lymphoblastic leukemia. Comput. Biol. Medicine 77 (2016)
Ruiquan Ge, Manli Zhou, Youxi Luo, Qinghan Meng, Guoqin Mai, Dongli Ma, Guoqing Wang, Fengfeng Zhou
McTwo: a two-step feature selection algorithm based on maximal information coefficient. BMC Bioinform. 17 (2016)
Miaomiao Zhao, Yunpeng Cai, Jiankui He, Guanyu Wang, Dongqing Wei, Yanjie Wei, Caiwan Zhang, Fengfeng Zhou
Personalized clinical data screening: Special issue on health informatics. Comput. Biol. Medicine 61 (2015)
Wei Du, Zhongbo Cao, Yan Wang, Fengfeng Zhou, Wei Pang, Xin Chen, Yuan Tian, Yanchun Liang
Specific Biomarkers: Detection of Cancer Biomarkers Through High-Throughput Transcriptomics Data. Cogn. Comput. 7 (6) (2015)
Bin Liu, Jikui Liu, Guoqing Wang, Kun Huang, Fan Li, Yang Zheng, Youxi Luo, Fengfeng Zhou
A novel electrocardiogram parameterization algorithm and its application in myocardial infarction detection. Comput. Biol. Medicine 61 (2015)
Weihua Pan, Yanan Zhao, Yun Xu, Fengfeng Zhou
WinHAP2: an extremely fast haplotype phasing program for long genotype sequences. BMC Bioinform. 15 (2014)
Bin Liu, Xiaotian Zhang, Honglan Huang, Ying Zhang, Fengfeng Zhou, Guoqing Wang
A novel molecular typing method of Mycobacteria based on DNA barcoding visualization. J. Clin. Bioinform. 4 (2014)
Po-Yen Wu, John H. Phan, Fengfeng Zhou, May D. Wang
Evaluation of normalization methods for RNA-Seq gene expression estimation. BIBM Workshops (2011)
Fengfeng Zhou, Ying Xu
cBar: a computer program to distinguish plasmid-derived from chromosome-derived sequence fragments in metagenomics data. Bioinform. 26 (16) (2010)
Fengfeng Zhou, Victor Olman, Ying Xu
Large-Scale Analyses of Glycosylation in Cellulases. Genom. Proteom. Bioinform. 7 (4) (2009)
Thao T. Tran, Fengfeng Zhou, Sarah Marshburn, Mark Stead, Sidney R. Kushner, Ying Xu
computational prediction of non-coding RNA genes in prokaryotic genomes. Bioinform. 25 (22) (2009)
Fengfeng Zhou, Victor Olman, Ying Xu
Barcodes for genomes and applications. BMC Bioinform. 9 (2008)
Yu Xue, Fengfeng Zhou, Chuanhai Fu, Ying Xu, Xuebiao Yao
SUMOsp: a web server for sumoylation site prediction. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Fengfeng Zhou, Yu Xue, Xuebiao Yao, Ying Xu
CSS-Palm: palmitoylation site prediction with a clustering and scoring strategy (CSS). Bioinform. 22 (7) (2006)
Fengfeng Zhou, Yinlong Xu, Guoliang Chen
No-wait scheduling in single-hop multi-channel LANs. Inf. Process. Lett. 93 (1) (2005)
Fengfeng Zhou, Guoliang Chen, Yinlong Xu
Construction of Small Worlds in the Physical Topology of Wireless Networks CoRR (2005)
Yu Xue, Fengfeng Zhou, Minjie Zhu, Kashif Ahmed, Guoliang Chen, Xuebiao Yao
GPS: a comprehensive www server for phosphorylation sites prediction. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Bin Song, Fengfeng Zhou, Guoliang Chen
Algorithms for Loosely Constrained Multiple Sequence Alignment. CIS (2004)
Fengfeng Zhou, Guoliang Chen, Yinlong Xu, Jun Gu
Minimizing ADMs on WDM Directed Fiber Trees. J. Comput. Sci. Technol. 18 (6) (2003)