John H. Phan

Publication Activity (10 Years)

Years Active: 2004-2016
Publications (10 Years): 3

Top Topics

Gene Expression

Biomedical Data

Top Venues

Publications

Hamid Reza Hassanzadeh, John H. Phan, May D. Wang
A multi-modal graph-based semi-supervised pipeline for predicting cancer survival. BIBM (2016)
John H. Phan, Ryan Hoffman, Sonal Kothari, Po-Yen Wu, May D. Wang
Integration of multi-modal biomedical data to predict cancer grade and patient survival. BHI (2016)
Hamid Reza Hassanzadeh, John H. Phan, May D. Wang
A Multi-Modal Graph-Based Semi-Supervised Pipeline for Predicting Cancer Survival. CoRR (2016)
Matt Schwartz, Martin Park, John H. Phan, May D. Wang
Integration of multimodal RNA-seq data for prediction of kidney cancer survival. BIBM (2015)
Hamid Reza Hassanzadeh, John H. Phan, May D. Wang
A semi-supervised method for predicting cancer survival using incomplete clinical data. EMBC (2015)
Cheng Yang, Po-Yen Wu, Li Tong, John H. Phan, May D. Wang
The impact of RNA-seq aligners on gene expression estimation. BCB (2015)
Ying Sha, John H. Phan, May D. Wang
Effect of low-expression gene filtering on detection of differentially expressed genes in RNA-seq data. EMBC (2015)
Hamid Reza Hassanzadeh, John H. Phan, May D. Wang
A Semi-Supervised Method for Predicting Cancer Survival Using Incomplete Clinical Data. CoRR (2015)
Hang Wu, John H. Phan, Ajay K. Bhatia, Caitlin A. Cundiff, Bahig M. Shehata, May D. Wang
Detection of blur artifacts in histopathological whole-slide images of endomyocardial biopsies. EMBC (2015)
Sahar Harati, John H. Phan, May D. Wang
Investigation of factors affecting RNA-seq gene expression calls. EMBC (2014)
Sonal Kothari, John H. Phan, Todd H. Stokes, Adeboye O. Osunkoya, Andrew N. Young, May D. Wang
Removing Batch Effects From Histopathological Images for Enhanced Cancer Diagnosis. IEEE J. Biomed. Health Informatics 18 (3) (2014)
John H. Phan, Sonal Kothari, May D. Wang
omniClassifier: a desktop grid computing system for big data prediction modeling. BCB (2014)
Cheng Yang, Po-Yen Wu, John H. Phan, May D. Wang
The impact of RNA-seq alignment pipeline on detection of differentially expressed genes. GlobalSIP (2014)
Sonal Kothari, John H. Phan, Andrew N. Young, May D. Wang
Histological image classification using biologically interpretable shape-based features. BMC Medical Imaging 13 (2013)
John H. Phan, Andrew N. Young, May Dongmei Wang
omniBiomarker: A Web-Based Application for Knowledge-Driven Biomarker Identification. IEEE Trans. Biomed. Eng. 60 (12) (2013)
Anjaly Poruthoor, John H. Phan, Sonal Kothari, May D. Wang
Exploration of genomic, proteomic, and histopathological image data integration methods for clinical prediction. ChinaSIP (2013)
Po-Yen Wu, John H. Phan, May D. Wang
An approach for assessing RNA-seq quantification algorithms in replication studies. GENSiPS (2013)
Sonal Kothari, John H. Phan, Todd H. Stokes, May D. Wang
Review: Pathology imaging informatics for quantitative analysis of whole-slide images. J. Am. Medical Informatics Assoc. 20 (6) (2013)
Po-Yen Wu, John H. Phan, May D. Wang
Assessing the impact of human genome annotation choice on RNA-seq expression estimates. BMC Bioinform. 14 (S-11) (2013)
Raghu Chandramohan, Po-Yen Wu, John H. Phan, May D. Wang
Benchmarking RNA-Seq quantification tools. EMBC (2013)
Raghu Chandramohan, Po-Yen Wu, John H. Phan, May D. Wang
Systematic Assessment of RNA-Seq Quantification Tools Using Simulated Sequence Data. BCB (2013)
R. Mitchell Parry, John H. Phan, May D. Wang
Win percentage: a novel measure for assessing the suitability of machine classifiers for biological problems. BMC Bioinform. 13 (S-3) (2012)
Sonal Kothari, Adeboye O. Osunkoya, John H. Phan, May D. Wang
Biological interpretation of morphological patterns in histopathological whole-slide images. BCB (2012)
John H. Phan, Chang F. Quo, May Dongmei Wang
Cardiovascular Genomics: A Biomarker Identification Pipeline. IEEE Trans. Inf. Technol. Biomed. 16 (5) (2012)
Sonal Kothari, John H. Phan, May D. Wang
Scale normalization of histopathological images for batch invariant cancer diagnostic models. EMBC (2012)
Chang F. Quo, Chanchala Kaddi, John H. Phan, Amin Zollanvari, Mingqing Xu, May D. Wang, Gil Alterovitz
Reverse engineering biomolecular systems using -omic data: challenges, progress and opportunities. Briefings Bioinform. 13 (4) (2012)
John H. Phan, Po-Yen Wu, May D. Wang
Improving the flexibility of RNA-Seq data analysis pipelines. GENSiPS (2012)
Po-Yen Wu, John H. Phan, May D. Wang
The effect of human genome annotation complexity on RNA-Seq gene expression quantification. BIBM Workshops (2012)
R. Mitchell Parry, John H. Phan, May D. Wang
Win percentage: a novel measure for assessing the suitability of machine classifiers for biological problems. BCB (2011)
Sonal Kothari, John H. Phan, Richard A. Moffitt, Todd H. Stokes, Shelby E. Hassberger, Qaiser Chaudry, Andrew N. Young, May D. Wang
Automatic batch-invariant color segmentation of histological cancer images. ISBI (2011)
Po-Yen Wu, John H. Phan, Fengfeng Zhou, May D. Wang
Evaluation of normalization methods for RNA-Seq gene expression estimation. BIBM Workshops (2011)
Po-Yen Wu, John H. Phan, May D. Wang
Exploring the feasibility of next-generation sequencing and microarray data meta-analysis. EMBC (2011)
Sonal Kothari, John H. Phan, Andrew N. Young, May D. Wang
Histological Image Feature Mining Reveals Emergent Diagnostic Properties for Renal Cancer. BIBM (2011)
Richard A. Moffitt, Qiqin Yin-Goen, Todd H. Stokes, R. Mitchell Parry, James H. Torrance, John H. Phan, Andrew N. Young, May D. Wang
caCORRECT2: Improving the accuracy and reliability of microarray data in the presence of artifacts. BMC Bioinform. 12 (2011)
Jaydeep K. Srimani, Po-Yen Wu, John H. Phan, May D. Wang
A distributed system for fast alignment of next-generation sequencing data. BIBM Workshops (2010)
John H. Phan, Qiqin Yin-Goen, Andrew N. Young, May D. Wang
Improving the Efficiency of Biomarker Identification Using Biological Knowledge. Pacific Symposium on Biocomputing (2009)
John H. Phan, Richard A. Moffitt, Andrea B. Barrett, May D. Wang
Improving Microarray Sample Size Using Bootstrap Data Combination. IMSCCS (2008)
John H. Phan, Richard A. Moffitt, Todd H. Stokes, May D. Wang
Evolving Biological Behavior in Gene-Based Cellular Simulations. BIBE (2007)
John H. Phan, May D. Wang
Estimating Classification Error to Identify Biomarkers in Time Series Expression Data. BIBE (2007)
John H. Phan, Andrew N. Young, May D. Wang
Selecting Clinically-Driven Biomarkers for Cancer Nanotechnology. EMBC (2006)
Todd H. Stokes, John H. Phan, Chang F. Quo, Shuming Nie, May D. Wang
Bio-Nano-Informatics: An Integrated Information Management System for Personalized Oncology. EMBC (2006)
John H. Phan, Chang F. Quo, Kejiao Guo, Weimin Feng, Geoffrey Wang, May D. Wang
Development of a Knowledge-Based Multi-Scheme Cancer Microarray Data Analysis System. CSB (2004)