Dongsup Kim

Publication Activity (10 Years)

Years Active: 2002-2024
Publications (10 Years): 11

Top Topics

Markov Random Field

Drug Resistance

Convolutional Neural Networks

Top Venues

J. Cheminformatics

Nucleic Acids Res.

Publications

Woosung Jeon, Dongsup Kim
AbFlex: designing antibody complementarity determining regions with flexible CDR definition. Bioinform. 40 (3) (2024)
Dongchan Yang, Taesu Chung, Dongsup Kim
DeepLUCIA: predicting tissue-specific chromatin loops using Deep Learning-based Universal Chromatin Interaction Annotator. Bioinform. 38 (14) (2022)
Ha Young Kim, Dongsup Kim
Prediction of mutation effects using a deep temporal convolutional network. Bioinform. 36 (7) (2020)
Aeri Lee, Dongsup Kim
CRDS: Consensus Reverse Docking System for target fishing. Bioinform. 36 (3) (2020)
Woosung Jeon, Dongsup Kim
FP2VEC: a new molecular featurizer for learning molecular properties. Bioinform. 35 (23) (2019)
Aeri Lee, Seungpyo Hong, Dongsup Kim
KRDS: a web server for evaluating drug resistance mutations in kinases by molecular docking. J. Cheminformatics 10 (1) (2018)
Dongchan Yang, Insu Jang, Jinhyuk Choi, Minseo Kim, Andrew J. Lee, Hyun-Woong Kim, Junghyun Eom, Dongsup Kim, Inkyung Jung, Byungwook Lee
3DIV: A 3D-genome Interaction Viewer and database. Nucleic Acids Res. 46 (Database-Issue) (2018)
Youngmahn Han, Dongsup Kim
Deep convolutional neural networks for pan-specific peptide-MHC class I binding prediction. BMC Bioinform. 18 (1) (2017)
Kyoungyeul Lee, Minho Lee, Dongsup Kim
Utilizing random Forest QSAR models with optimized parameters for target identification and its application to target-fishing server. BMC Bioinform. 18 (16) (2017)
Seungpyo Hong, Dongsup Kim
Library of binding protein scaffolds (LibBP): a computational platform for selection of binding protein scaffolds. Bioinform. 32 (11) (2016)
Chan-seok Jeong, Dongsup Kim
Structure-based Markov random field model for representing evolutionary constraints on functional sites. BMC Bioinform. 17 (2016)
Minho Lee, Keunwan Park, Dongsup Kim
Interaction network among functional drug groups. BMC Syst. Biol. 7 (S-3) (2013)
Minho Lee, Sangjo Han, Hyeshik Chang, Youn-Sig Kwak, David M. Weller, Dongsup Kim
FitSearch: a robust way to interpret a yeast fitness profile in terms of drug's mode-of-action. BMC Genom. 14 (S-1) (2013)
Minho Lee, Dongsup Kim
Large-scale reverse docking profiles and their applications. BMC Bioinform. 13 (S-17) (2012)
Changki Hong, Minho Lee, Dongsup Kim, Dong San Kim, Kwang-Hyun Cho, Insik Shin
A checkpoints capturing timing-robust Boolean model of the budding yeast cell cycle regulatory network. BMC Syst. Biol. 6 (2012)
Chan-seok Jeong, Dongsup Kim
Coevolved Residues and the Functional Association for Intrinsically Disordered Proteins. Pacific Symposium on Biocomputing (2012)
Keunwan Park, Dongsup Kim
Drug-drug relationship based on target information: application to drug target identification. BMC Syst. Biol. 5 (S-2) (2011)
Keunwan Park, Dongsup Kim
Modeling allosteric signal propagation using protein structure networks. BMC Bioinform. 12 (S-1) (2011)
Inkyung Jung, Akihisa Matsuyama, Minoru Yoshida, Dongsup Kim
PostMod: sequence based prediction of kinase-specific phosphorylation sites with indirect relationship. BMC Bioinform. 11 (S-1) (2010)
Chan-seok Jeong, Dongsup Kim
Linear predictive coding representation of correlated mutation for protein sequence alignment. BMC Bioinform. 11 (S-2) (2010)
Chan-seok Jeong, Dongsup Kim
Linear predictive coding representation of correlated mutation for protein sequence alignment. DTMBIO (2009)
Inkyung Jung, Dongsup Kim
SIMPRO: simple protein homology detection method by using indirect signals. Bioinform. 25 (6) (2009)
Byung-chul Lee, Dongsup Kim
A new method for revealing correlated mutations under the structural and functional constraints in proteins. Bioinform. 25 (19) (2009)
Inkyung Jung, Jaehyung Lee, Soo-Young Lee, Dongsup Kim
Application of nonnegative matrix factorization to improve profile-profile alignment features for fold recognition and remote homolog detection. BMC Bioinform. 9 (2008)
Sangjo Han, Dongsup Kim
Inference of Protein Complex Activities from Chemical-Genetic Profile and Its Applications: Predicting Drug-Target Pathways. PLoS Comput. Biol. 4 (8) (2008)
Sheehyun Kim, Dongsup Kim
Inference of Gene Regulatory Networks Using Time Sliding Comparison and Transcriptional Lagging Time from Time Series Gene Expression Profiles. BIBE (2007)
Minho Lee, Chan-seok Jeong, Dongsup Kim
Predicting and improving the protein sequence alignment quality by support vector regression. BMC Bioinform. 8 (2007)
Sangjo Han, Dongsup Kim
AtRTPrimer: database for Arabidopsis genome-wide homogeneous and specific RT-PCR primer-pairs. BMC Bioinform. 7 (2006)
Sangjo Han, Byung-chul Lee, Seung Taek Yu, Chan-seok Jeong, Soyoung Lee, Dongsup Kim
Fold recognition by combining profile-profile alignment and support vector machine. Bioinform. 21 (11) (2005)
Jinbo Xu, Ming Li, Dongsup Kim, Ying Xu
Raptor: Optimal Protein Threading by Linear Programming. J. Bioinform. Comput. Biol. 1 (1) (2003)
Manesh J. Shah, Sergei Passovets, Dongsup Kim, Kyle Ellrott, Li Wang, Inna Vokler, Philip F. LoCascio, Dong Xu, Ying Xu
A Computational Pipeline for Protein Structure Prediction and Analysis at Genome Scale. BIBE (2003)
Jinbo Xu, Ming Li, Guo-Hui Lin, Dongsup Kim, Ying Xu
Protein Threading by Linear Programming. Pacific Symposium on Biocomputing (2003)
Manesh J. Shah, Sergei Passovets, Dongsup Kim, Kyle Ellrott, Li Wang, Inna Vokler, Philip F. LoCascio, Dong Xu, Ying Xu
A computational pipeline for protein structure prediction and analysis at genome scale. Bioinform. 19 (15) (2003)
Ying Xu, Dong Xu, Dongsup Kim, Victor Olman, Jane Razumovskaya, Tao Jiang
Automated assignment of backbone NMR peaks using constrained bipartite matching. Comput. Sci. Eng. 4 (1) (2002)