Daniel McDonald

Publication Activity (10 Years)

Years Active: 1997-2024
Publications (10 Years): 14

Top Topics

Dimensionality Reduction

Knowledge Resources

Orders Of Magnitude Speedup

Top Venues

Publications

Yueyu Jiang, Daniel McDonald, Daniela Perry, Rob Knight, Siavash Mirarab
Scaling DEPP phylogenetic placement to ultra-large reference trees: a tree-aware ensemble approach. Bioinform. 40 (6) (2024)
Igor Sfiligoi, Daniel McDonald, Rob Knight, Frank Würthwein
Testing GitHub projects on custom resources using unprivileged Kubernetes runners. CoRR (2023)
Igor Sfiligoi, Daniel McDonald, Rob Knight, Frank Würthwein
Testing GitHub projects on custom resources using unprivileged Kubernetes runners. PEARC (2023)
George Armstrong, Gibraan Rahman, Cameron Martino, Daniel McDonald, Antonio Gonzalez, Gal Mishne, Rob Knight
Applications and Comparison of Dimensionality Reduction Methods for Microbiome Data. Frontiers Bioinform. 2 (2022)
Igor Sfiligoi, Daniel McDonald, Rob Knight
Accelerating Key Bioinformatics Tasks 100-fold by Improving Memory Access. PEARC (2021)
Igor Sfiligoi, Daniel McDonald, Rob Knight
Enabling microbiome research on personal devices. e-Science (2021)
Igor Sfiligoi, Daniel McDonald, Rob Knight
Accelerating key bioinformatics tasks 100-fold by improving memory access. CoRR (2021)
Igor Sfiligoi, Daniel McDonald, Rob Knight
Enabling microbiome research on personal devices. CoRR (2021)
Vineet Pandey, Tushar Koul, Chen Yang, Daniel McDonald, Mad Price Ball, Bastian Greshake Tzovaras, Rob Knight, Scott R. Klemmer
Galileo: Citizen-led Experimentation Using a Social Computing System. CHI (2021)
Igor Sfiligoi, Daniel McDonald, Rob Knight
Porting and optimizing UniFrac for GPUs. CoRR (2020)
Yunli Wang, René Richard, Daniel McDonald
Competitive Analysis with Graph Embedding on Patent Networks. CBI (1) (2020)
Igor Sfiligoi, Daniel McDonald, Rob Knight
Porting and optimizing UniFrac for GPUs: Reducing microbiome analysis runtimes by orders of magnitude. PEARC (2020)
Daniel McDonald
Minimax Density Estimation for Growing Dimension. AISTATS (2017)
Daniel McDonald, Randall J. Boyle, John Anderson
When Deceitful Chats Look Truthful. J. Comput. Inf. Syst. 56 (4) (2016)
Cosmin Munteanu, Heather Molyneaux, Julie Maitland, Daniel McDonald, Rock Leung, Hélène Fournier, Joanna Lumsden
Hidden in plain sight: low-literacy adults in a developed country overcoming social and educational challenges through mobile learning support tools. Pers. Ubiquitous Comput. 18 (6) (2014)
François G. Dorais, Steven Gubkin, Daniel McDonald, Manuel Rivera
Automorphism Groups of Countably Categorical Linear Orders are Extremely Amenable. Order 30 (2) (2013)
Cosmin Munteanu, Heather Molyneaux, Julie Maitland, Daniel McDonald, Rock Leung
Tale of two studies: challenges in field research with low-literacy adult learners in a developed country. CHI Extended Abstracts (2012)
Jesse Stombaugh, Jeremy Widmann, Daniel McDonald, Rob Knight
Boulder ALignment Editor (ALE): a web-based RNA alignment tool. Bioinform. 27 (12) (2011)
Cosmin Munteanu, Heather Molyneaux, Daniel McDonald, Joanna Lumsden, Rock Leung, Hélène Fournier, Julie Maitland
"Showing off" your mobile device: adult literacy learning in the classroom and beyond. Mobile HCI (2011)
Cosmin Munteanu, Joanna Lumsden, Hélène Fournier, Rock Leung, Danny D'Amours, Daniel McDonald, Julie Maitland
ALEX: mobile language assistant for low-literacy adults. Mobile HCI (2010)
Joanna Lumsden, Rock Leung, Danny D'Amours, Daniel McDonald
: a mobile adult literacy experiential learning application. Int. J. Mob. Learn. Organisation 4 (2) (2010)
Paul Marshall, Matthew Woitaszek, Henry M. Tufo, Rob Knight, Daniel McDonald, Julia Goodrich
Ensemble dispatching on an IBM Blue Gene/L for a bioinformatics knowledge environment. SC-MTAGS (2009)
Maribeth Oscamou, Daniel McDonald, Von Bing Yap, Gavin A. Huttley, Manuel E. Lladser, Rob Knight
Comparison of methods for estimating the nucleotide substitution matrix. BMC Bioinform. 9 (2008)
Daniel McDonald, Hsinchun Chen
Summary in context: Searching versus browsing. ACM Trans. Inf. Syst. 24 (1) (2006)
Byron Marshall, Hua Su, Daniel McDonald, Shauna Eggers, Hsinchun Chen
Aggregating Automatically Extracted Regulatory Pathway Relations. IEEE Trans. Inf. Technol. Biomed. 10 (1) (2006)
Daniel McDonald, Hsinchun Chen, Robert P. Schumaker
Transforming Open-Source Documents to Terror Networks: The Arizona TerrorNet. AAAI Spring Symposium: AI Technologies for Homeland Security (2005)
Byron Marshall, Hua Su, Daniel McDonald, Hsinchun Chen
Linking Ontological Resources Using Aggregatable Substance Identifiers to Organize Extracted Relations. Pacific Symposium on Biocomputing (2005)
Byron Marshall, Daniel McDonald, Hsinchun Chen, Wingyan Chung
EBizPort: Collecting and analyzing business intelligence information. J. Assoc. Inf. Sci. Technol. 55 (10) (2004)
Daniel McDonald, Hsinchun Chen, Hua Su, Byron Marshall
Extracting gene pathway relations using a hybrid grammar: the Arizona Relation Parser. Bioinform. 20 (18) (2004)
Gondy Leroy, Hsinchun Chen, Jesse D. Martinez, Shauna Eggers, Ryan R. Falsey, Kerri L. Kislin, Zan Huang, Jiexun Li, Jennifer Jie Xu, Daniel McDonald, T. Gavin Ng
Genescene: Biomedical Text And Data Mining. JCDL (2003)
Michael Chau, Hsinchun Chen, Jialun Qin, Yilu Zhou, Wai-Ki Sung, Yongchi Chen, Yi Qin, Daniel McDonald, Ann M. Lally, Matthew Landon
NanoPort: a web portal for nanoscale science and technology. JCDL (2002)
Michael Chau, Hsinchun Chen, Jialun Qin, Yilu Zhou, Yi Qin, Wai-Ki Sung, Daniel McDonald
Comparison of two approaches to building a vertical search tool: a case study in the nanotechnology domain. JCDL (2002)
Daniel McDonald, Hsinchun Chen
Using sentence-selection heuristics to rank text segments in TXTRACTOR. JCDL (2002)
Robert Reams, Greg Chatham, William Kile Glunt, Daniel McDonald, Tom L. Hayden
Determining Protein Structure using the Distance Geometry Program APA. Comput. Chem. 23 (2) (1999)
Jonathan Edwards, Greg Chatham, William Kile Glunt, Daniel McDonald, Chris Wells, Tom L. Hayden
Sampling Properties of the Alternating Projection Distance Geometry Algorithm Applied to Unconstrained Polypeptide Chains. Comput. Chem. 21 (2) (1997)